Metamenu

Effective results for Fusobacterium necrophorum D12 (eggnog40)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 24 proteins (6 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
556263.FSEG_01483(PF03553)ER
556263.FSEG_00019(PF03553)ER
556263.FSEG_01020(PF03553)ER
556263.FSEG_00101(PF03553)ER
556263.FSEG_00115(PF03553)ER
556263.FSEG_00410(PF03553)(ER); ER
556263.FSEG_00629(PF03553)ER
556263.FSEG_00116(PF02971) (PF07837)
556263.FSEG_01472(PF03059)
556263.FSEG_00424(PF01991)
556263.FSEG_00073PF06176
556263.FSEG_00275PF06176
556263.FSEG_01837(PF00766)
556263.FSEG_00100(PF00766)
556263.FSEG_00827(PF00766)
556263.FSEG_01312(PF03553)
556263.FSEG_02147PF13475
556263.FSEG_02148PF13475
556263.FSEG_00140(PF00766)
556263.FSEG_02155PF13475
556263.FSEG_00550PF13475
556263.FSEG_02168(PF00766)
556263.FSEG_01139(PF00766)
556263.FSEG_01682(PF03553)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================