Effective results for Oxalobacter formigenes OXCC13 (eggnog40)

Summary

Number of putative secreted proteins: 52
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 52 proteins (43 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
556269.OFBG_00561				PF08238	(ER)
556269.OFBG_00638				PF08238	ER
556269.OFBG_00639				PF08238	ER
556269.OFBG_00633				(PF13540)	ER
556269.OFBG_00636				PF08238	ER
556269.OFBG_00637				PF08238	(ER)
556269.OFBG_00645				(PF13540)	ER
556269.OFBG_00641				(PF13540)	(ER)
556269.OFBG_00643				PF08238	ER
556269.OFBG_00642				(PF13540)	ER
556269.OFBG_01374				PF08238	(mitochondrial)
556269.OFBG_01770				PF08238	ER
556269.OFBG_00653				PF08238	(ER)
556269.OFBG_00650				(PF13540)	ER
556269.OFBG_00467				PF08238	ER
556269.OFBG_01752				PF08238	(ER)
556269.OFBG_00936				PF08238	ER
556269.OFBG_00935				PF08238	ER
556269.OFBG_00783				PF08238	ER
556269.OFBG_00679				PF08238	ER
556269.OFBG_00683				PF08238	(mitochondrial)
556269.OFBG_00863				PF08238	ER
556269.OFBG_00502				PF08238	ER
556269.OFBG_00504				PF08238	ER
556269.OFBG_00532				PF08238	mitochondrial
556269.OFBG_00523				PF08238	ER
556269.OFBG_00899				PF08238	ER
556269.OFBG_00553				PF08238	ER
556269.OFBG_00559				PF08238	ER
556269.OFBG_01131				PF08238	ER
556269.OFBG_00545				PF08238	(mitochondrial)
556269.OFBG_00590				PF08238	ER
556269.OFBG_00592				PF08238	ER
556269.OFBG_00621				(PF13540)	(mitochondrial)
556269.OFBG_00556				PF08238	(mitochondrial)
556269.OFBG_00580				PF08238
556269.OFBG_00585				PF08238
556269.OFBG_00745				PF08238	not used
556269.OFBG_00634				PF08238
556269.OFBG_01758				(PF13436)
556269.OFBG_00819				PF08238
556269.OFBG_00681				PF08238
556269.OFBG_01249				(PF12588)
556269.OFBG_00861				PF08238
556269.OFBG_01920				PF08238
556269.OFBG_00859				PF02415
556269.OFBG_00539				PF08238
556269.OFBG_01431				PF02415
556269.OFBG_00544				PF08238
556269.OFBG_00166				PF08238
556269.OFBG_01884				(PF11969)
556269.OFBG_01405				PF06888

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================