Metamenu

Effective results for Gemella haemolysans M341 (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 48 proteins (14 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
562981.HMPREF0428_00014(PF01717)(mitochondrial)
562981.HMPREF0428_00313(PF06280)ER
562981.HMPREF0428_00256(PF13529)ER
562981.HMPREF0428_00504(PF13529)ER
562981.HMPREF0428_01666(PF11070)ER
562981.HMPREF0428_01593(PF04991)(ER)
562981.HMPREF0428_01595(PF04991)ER
562981.HMPREF0428_01446(PF06280)ER
562981.HMPREF0428_01611(PF13529)ER
562981.HMPREF0428_01615(PF13529)ER
562981.HMPREF0428_01554PF02916(ER)
562981.HMPREF0428_01252(PF03848)(plastid)
562981.HMPREF0428_00721(PF01717)(mitochondrial)
562981.HMPREF0428_01606(PF01633)(mitochondrial)
562981.HMPREF0428_01372(PF01610)
562981.HMPREF0428_01518(PF10437)
562981.HMPREF0428_01516(PF10437)
562981.HMPREF0428_00822(PF01717)
562981.HMPREF0428_00821(PF01717)
562981.HMPREF0428_00645(PF05448)
562981.HMPREF0428_00644(PF05448)
562981.HMPREF0428_01918PF13518
562981.HMPREF0428_01919(PF01610)
562981.HMPREF0428_00938PF13518
562981.HMPREF0428_01324(PF05448)
562981.HMPREF0428_01255(PF03848)
562981.HMPREF0428_00073(PF01610)
562981.HMPREF0428_01793(PF01610)
562981.HMPREF0428_01313PF03048
562981.HMPREF0428_01916PF13518
562981.HMPREF0428_00734(PF10437)
562981.HMPREF0428_01678PF13518
562981.HMPREF0428_01587(PF01610)
562981.HMPREF0428_01070PF13518
562981.HMPREF0428_00502(PF01610)not used
562981.HMPREF0428_01116(PF01610)not used
562981.HMPREF0428_01156(PF01610)
562981.HMPREF0428_00883PF13518
562981.HMPREF0428_00407(PF01633)
562981.HMPREF0428_00401PF13518
562981.HMPREF0428_01129PF13518
562981.HMPREF0428_00528(PF01610)
562981.HMPREF0428_01901PF13518
562981.HMPREF0428_01602PF13518
562981.HMPREF0428_01895(PF01717)
562981.HMPREF0428_01560(PF04991)
562981.HMPREF0428_01626PF13518
562981.HMPREF0428_01398PF13518

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================