Effective results for Ilyobacter polytropus DSM 2926 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 32 proteins (2 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
572544.Ilyop_0409				(PF03522)	ER
572544.Ilyop_1421				(PF02906)	(mitochondrial)
572544.Ilyop_0026				(PF17147)	(mitochondrial)
572544.Ilyop_1217				(PF01257)	(mitochondrial)
572544.Ilyop_0689				(PF02906) (PF02256)
572544.Ilyop_1221				(PF02906) (PF02256)
572544.Ilyop_0556				(PF05034) (PF07476)
572544.Ilyop_0635				(PF02906) (PF02256)
572544.Ilyop_0628				(PF02906) (PF02256)
572544.Ilyop_0543				(PF17147)	(mitochondrial)
572544.Ilyop_0904				(PF11074)
572544.Ilyop_0691				(PF01257)
572544.Ilyop_1098				(PF17147)
572544.Ilyop_0042				(PF00301)	not used
572544.Ilyop_0040				(PF00301)	not used
572544.Ilyop_0041				(PF00301)	not used
572544.Ilyop_1401				(PF01257)
572544.Ilyop_1220				(PF01257)
572544.Ilyop_0799				PF03071
572544.Ilyop_1331				(PF00301)	not used
572544.Ilyop_0086				(PF17147)
572544.Ilyop_1743				(PF07892)
572544.Ilyop_1744				(PF07892)
572544.Ilyop_1218				(PF02906)
572544.Ilyop_0346				(PF01257)
572544.Ilyop_0627				(PF01257)
572544.Ilyop_0625				(PF01257)
572544.Ilyop_0147				(PF06176)
572544.Ilyop_1738				(PF07892)
572544.Ilyop_0106				(PF17147)
572544.Ilyop_0590				PF06888
572544.Ilyop_0595				(PF00301)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================