Effective results for Aminobacterium colombiense DSM 12261 (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 43 proteins (1 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
572547.Amico_0512				(PF17147) (PF01855)	ER
572547.Amico_1707				(PF14330)	(mitochondrial)
572547.Amico_1634				(PF03577)	ER
572547.Amico_1628				(PF03577)	ER
572547.Amico_0173				(PF03577)	(mitochondrial)
572547.Amico_0805				(PF01992)	(mitochondrial)
572547.Amico_0809				(PF01813)	(mitochondrial); mitochondrial
572547.Amico_0491				(PF00742)	(ER)
572547.Amico_1642				(PF00742)	(mitochondrial)
572547.Amico_0991				(PF01496)	(mitochondrial)
572547.Amico_0180				(PF03577)	ER
572547.Amico_0715				(PF07837) (PF02971)
572547.Amico_0795				(PF17147) (PF01855)
572547.Amico_1018				(PF17147) (PF01855)
572547.Amico_1539				(PF07837) (PF02971)
572547.Amico_1531				(PF01855)	(plastid)
572547.Amico_1315				(PF17147) (PF01855)
572547.Amico_1077				(PF17147) (PF01855)
572547.Amico_0558				(PF10143)
572547.Amico_1451				PF03604	not used
572547.Amico_1450				(PF01855)
572547.Amico_0367				(PF02933)
572547.Amico_0369				(PF10143)
572547.Amico_0287				(PF00742)
572547.Amico_0807				(PF16886)
572547.Amico_0806				(PF01990)
572547.Amico_0804				(PF01991)
572547.Amico_0802				(PF01496)
572547.Amico_1904				(PF04961)
572547.Amico_0519				(PF00742)
572547.Amico_1304				(PF09861)
572547.Amico_1538				(PF04961)
572547.Amico_1225				(PF09861)
572547.Amico_0225				(PF09861)
572547.Amico_1250				(PF02317)
572547.Amico_0986				(PF16886)
572547.Amico_0987				(PF01990)
572547.Amico_0984				(PF01813)
572547.Amico_0988				(PF01992)
572547.Amico_0989				(PF01991)
572547.Amico_1480				(PF14336)
572547.Amico_1803				(PF02317)
572547.Amico_1664				(PF09861)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================