Metamenu

Effective results for Oribacterium sinus F0268 (eggnog40)

Summary

Number of putative secreted proteins: 46
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 46 proteins (29 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
585501.HMPREF6123_1599PF01637mitochondrial
585501.HMPREF6123_2229(PF04326)ER
585501.HMPREF6123_2521PF13173(mitochondrial)
585501.HMPREF6123_0110(PF04326)(mitochondrial)
585501.HMPREF6123_1771PF13173(mitochondrial); mitochondrial
585501.HMPREF6123_1602PF13173mitochondrial
585501.HMPREF6123_1596(PF01000) (PF01193)
585501.HMPREF6123_1295PF13173(mitochondrial)
585501.HMPREF6123_1339PF13173(mitochondrial)
585501.HMPREF6123_2081PF13173(mitochondrial)
585501.HMPREF6123_0118(PF01000) (PF01193)
585501.HMPREF6123_0091PF13173
585501.HMPREF6123_1168(PF04383)
585501.HMPREF6123_1167(PF13151)
585501.HMPREF6123_1372(PF14512)
585501.HMPREF6123_1282PF13173
585501.HMPREF6123_1363(PF12646)
585501.HMPREF6123_1588PF12873
585501.HMPREF6123_2037PF01637
585501.HMPREF6123_2448PF13173
585501.HMPREF6123_0744(PF14512)
585501.HMPREF6123_2277(PF04383)
585501.HMPREF6123_0520(PF04326)
585501.HMPREF6123_1793(PF06414)
585501.HMPREF6123_2317PF13173
585501.HMPREF6123_1323(PF06414)
585501.HMPREF6123_1329PF13173
585501.HMPREF6123_1257(PF04326)
585501.HMPREF6123_2322PF01637
585501.HMPREF6123_0257PF04991
585501.HMPREF6123_2134PF01637
585501.HMPREF6123_1687PF13173
585501.HMPREF6123_0021PF04991
585501.HMPREF6123_0022PF04991
585501.HMPREF6123_0242PF13173
585501.HMPREF6123_2227(PF04326)
585501.HMPREF6123_1456PF01637
585501.HMPREF6123_0019PF04991
585501.HMPREF6123_0006PF04991
585501.HMPREF6123_2122PF13173
585501.HMPREF6123_2167PF13173
585501.HMPREF6123_2162PF11443
585501.HMPREF6123_2178PF13173
585501.HMPREF6123_1529(PF08357)
585501.HMPREF6123_1607PF13173
585501.HMPREF6123_1954(PF14512)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================