Metamenu

Effective results for Lactobacillus amylolyticus DSM 11664 (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 15 proteins (7 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
585524.HMPREF0493_0511(PF13906)ER
585524.HMPREF0493_0910(PF03051)
585524.HMPREF0493_0901(PF03051)
585524.HMPREF0493_0476PF03577not used
585524.HMPREF0493_0475PF03577
585524.HMPREF0493_0474PF03577
585524.HMPREF0493_0815PF03577
585524.HMPREF0493_0738(PF03051)
585524.HMPREF0493_1254PF03577
585524.HMPREF0493_0344PF03577
585524.HMPREF0493_0417(PF06838)
585524.HMPREF0493_0887PF03577
585524.HMPREF0493_1574(PF13127)
585524.HMPREF0493_1218(PF03051)
585524.HMPREF0493_0934(PF06838)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================