Effective results for Brevibacterium mcbrellneri ATCC 49030 (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 25 proteins (3 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
585530.HMPREF0183_1494				(PF07516) (PF01043)	(mitochondrial)
585530.HMPREF0183_1248				(PF08310)	ER
585530.HMPREF0183_2104				(PF00648)	mitochondrial
585530.HMPREF0183_1311				(PF11070)	ER
585530.HMPREF0183_0002				(PF08310)	ER
585530.HMPREF0183_1959				(PF08310)	ER
585530.HMPREF0183_0628				(PF03243)	(ER)
585530.HMPREF0183_2150				(PF04886)	ER
585530.HMPREF0183_1453				(PF06071)	plastid
585530.HMPREF0183_0634				(PF03147) (PF01409)
585530.HMPREF0183_1601				(PF07516) (PF01043)
585530.HMPREF0183_2070				(PF06032)
585530.HMPREF0183_1138				(PF01409)
585530.HMPREF0183_1139				(PF03147)
585530.HMPREF0183_2069				(PF06032)
585530.HMPREF0183_2068				(PF06032)
585530.HMPREF0183_1788				(PF16565)
585530.HMPREF0183_1518				(PF08310)
585530.HMPREF0183_1442				(PF06071)
585530.HMPREF0183_0279				(PF07516)
585530.HMPREF0183_0053				PF00828
585530.HMPREF0183_0280				(PF01043)
585530.HMPREF0183_0629				(PF03243)
585530.HMPREF0183_1156				PF00828	not used
585530.HMPREF0183_1298				PF08213	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================