Effective results for Brevibacterium mcbrellneri ATCC 49030 (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 25 proteins (3 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
585530.HMPREF0183_1494(PF07516) (PF01043)(mitochondrial)
585530.HMPREF0183_1248(PF08310)ER
585530.HMPREF0183_2104(PF00648)mitochondrial
585530.HMPREF0183_1311(PF11070)ER
585530.HMPREF0183_0002(PF08310)ER
585530.HMPREF0183_1959(PF08310)ER
585530.HMPREF0183_0628(PF03243)(ER)
585530.HMPREF0183_2150(PF04886)ER
585530.HMPREF0183_1453(PF06071)plastid
585530.HMPREF0183_0634(PF03147) (PF01409)
585530.HMPREF0183_1601(PF07516) (PF01043)
585530.HMPREF0183_2070(PF06032)
585530.HMPREF0183_1138(PF01409)
585530.HMPREF0183_1139(PF03147)
585530.HMPREF0183_2069(PF06032)
585530.HMPREF0183_2068(PF06032)
585530.HMPREF0183_1788(PF16565)
585530.HMPREF0183_1518(PF08310)
585530.HMPREF0183_1442(PF06071)
585530.HMPREF0183_0279(PF07516)
585530.HMPREF0183_0053PF00828
585530.HMPREF0183_0280(PF01043)
585530.HMPREF0183_0629(PF03243)
585530.HMPREF0183_1156PF00828not used
585530.HMPREF0183_1298PF08213not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================