Metamenu

Effective results for Streptomyces pratensis ATCC 33331 (eggnog40)

Summary

Number of putative secreted proteins: 91
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 31 eukaryotic-like domains, contained in 91 proteins (2 high, 89 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
591167.Sfla_5056(PF03747)mitochondrial; (mitochondrial)
591167.Sfla_0462(PF09362)ER
591167.Sfla_0866(PF09362)mitochondrial
591167.Sfla_0270(PF13653)mitochondrial
591167.Sfla_1448(PF07555)mitochondrial
591167.Sfla_4469(PF13349)ER
591167.Sfla_1395(PF03259)ER
591167.Sfla_4563(PF04886)ER
591167.Sfla_6238(PF00079)(ER)
591167.Sfla_3643(PF05719)ER; (ER)
591167.Sfla_4453(PF03995)ER
591167.Sfla_5906(PF03423)ER; (mitochondrial)
591167.Sfla_0771(PF01670)ER
591167.Sfla_6398(PF03995)mitochondrial
591167.Sfla_6397(PF03995)mitochondrial
591167.Sfla_0028(PF16483)(ER)
591167.Sfla_1765(PF16483)mitochondrial
591167.Sfla_6354(PF01670)ER
591167.Sfla_4228(PF07555)(mitochondrial)
591167.Sfla_2609(PF05719)ER
591167.Sfla_4291(PF03995)mitochondrial
591167.Sfla_3731(PF03995)ER
591167.Sfla_0129(PF16483)mitochondrial; (mitochondrial)
591167.Sfla_1795(PF13349)ER; (ER)
591167.Sfla_5873(PF01186)(mitochondrial)
591167.Sfla_4630(PF00755)(ER)
591167.Sfla_5470(PF03029)(ER)
591167.Sfla_5657(PF14033)plastid
591167.Sfla_6428(PF05719)(mitochondrial)
591167.Sfla_4039(PF15588)
591167.Sfla_6348(PF01453)
591167.Sfla_1758(PF03029)
591167.Sfla_1756(PF03259)
591167.Sfla_6153(PF13349)
591167.Sfla_4800(PF03747)
591167.Sfla_6138(PF05719)
591167.Sfla_0865(PF12826)
591167.Sfla_1447(PF01453)
591167.Sfla_0233(PF03029)
591167.Sfla_0232(PF03259)
591167.Sfla_1617(PF03936)
591167.Sfla_4097(PF13349)
591167.Sfla_0168(PF03259)
591167.Sfla_0611(PF03259)
591167.Sfla_1393(PF03029)
591167.Sfla_5665(PF01756)
591167.Sfla_1330(PF05448)
591167.Sfla_6044(PF00102)
591167.Sfla_2697(PF03259)
591167.Sfla_2699(PF03029)
591167.Sfla_0190(PF13600)
591167.Sfla_0731(PF03029)
591167.Sfla_0733(PF03259)
591167.Sfla_0738(PF03803)
591167.Sfla_2016(PF13349)
591167.Sfla_1842(PF12826)
591167.Sfla_5925(PF01756)
591167.Sfla_5468(PF03259)
591167.Sfla_3525(PF13570)
591167.Sfla_3527(PF13570)
591167.Sfla_3832(PF03259)
591167.Sfla_0280(PF05448)
591167.Sfla_4875(PF12826)
591167.Sfla_1760(PF03259)
591167.Sfla_1762(PF03029)
591167.Sfla_4838(PF03747)
591167.Sfla_4797(PF03747)
591167.Sfla_4798(PF03747)
591167.Sfla_4799(PF03747)
591167.Sfla_6129(PF06241)
591167.Sfla_5428PF02373
591167.Sfla_3518(PF12826)
591167.Sfla_0609(PF03029)
591167.Sfla_2465(PF09445)
591167.Sfla_2642(PF13570)
591167.Sfla_3564(PF13349)
591167.Sfla_4942(PF01453)
591167.Sfla_4493(PF00079)
591167.Sfla_6228(PF03259)
591167.Sfla_6226(PF03029)
591167.Sfla_2001(PF03029)
591167.Sfla_2003(PF03259)
591167.Sfla_0189(PF13600)
591167.Sfla_3637(PF03747)
591167.Sfla_4533(PF03029)
591167.Sfla_4531(PF03259)
591167.Sfla_1119(PF05448)
591167.Sfla_1548(PF03747)
591167.Sfla_0235(PF03259)
591167.Sfla_4618(PF09362)
591167.Sfla_3541PF08213not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================