Effective results for Eubacterium saphenum ATCC 49989 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 22 proteins (14 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
592031.GCWU000322_00453				(PF00112)	ER
592031.GCWU000322_00466				PF03382	(ER)
592031.GCWU000322_00430				PF03382	ER
592031.GCWU000322_00685				(PF09683)	ER
592031.GCWU000322_00867				PF10422	ER
592031.GCWU000322_00714				PF03382	mitochondrial
592031.GCWU000322_00285				PF03382	ER
592031.GCWU000322_00375				(PF00112)	ER
592031.GCWU000322_00025				(PF13507)
592031.GCWU000322_00483				PF03382
592031.GCWU000322_00482				PF03382
592031.GCWU000322_00464				PF03382
592031.GCWU000322_00939				PF03382
592031.GCWU000322_00937				PF03382
592031.GCWU000322_00580				PF03382
592031.GCWU000322_00581				PF03382
592031.GCWU000322_00254				(PF01121)
592031.GCWU000322_00255				(PF01121)
592031.GCWU000322_00502				(PF01991)
592031.GCWU000322_00940				PF03382
592031.GCWU000322_00011				(PF13507)
592031.GCWU000322_00379				PF03382

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================