Effective results for Caldicellulosiruptor kristjanssonii I77R1B (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 37 proteins (14 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
632335.Calkr_2532(PF01930)(ER)
632335.Calkr_1993(PF00686)ER
632335.Calkr_0770(PF01807)(mitochondrial); mitochondrial
632335.Calkr_1541(PF03796) (PF01807)
632335.Calkr_1827PF13936(mitochondrial)
632335.Calkr_0763(PF16661)(plastid)
632335.Calkr_0223(PF13394)(mitochondrial)
632335.Calkr_2140(PF03796)ER
632335.Calkr_0439PF13936
632335.Calkr_1882(PF13394)
632335.Calkr_1989(PF00686)
632335.Calkr_1995PF08784
632335.Calkr_2520(PF13394)
632335.Calkr_2523PF07522
632335.Calkr_2418(PF01930)
632335.Calkr_0270(PF13394)
632335.Calkr_2084(PF03796)
632335.Calkr_2060(PF01807)
632335.Calkr_1260(PF16661)
632335.Calkr_0394(PF13394)
632335.Calkr_0026PF13936
632335.Calkr_0732PF13936
632335.Calkr_2271PF13936
632335.Calkr_1678PF13936
632335.Calkr_0650(PF03796)
632335.Calkr_0810(PF09419)
632335.Calkr_2058PF13936
632335.Calkr_0170(PF13394)
632335.Calkr_1032(PF13394)
632335.Calkr_0081(PF01807)
632335.Calkr_0152PF13936
632335.Calkr_2347PF13936
632335.Calkr_2010PF13936
632335.Calkr_1308PF13936
632335.Calkr_1301PF13936
632335.Calkr_2576(PF01930)
632335.Calkr_1792(PF13394)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================