Effective results for Marivirga tractuosa DSM 4126 (eggnog40)

Summary

Number of putative secreted proteins: 94
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 94 proteins (5 high, 89 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
643867.Ftrac_0686				(PF13181) (PF12895)	ER
643867.Ftrac_1372				(PF13429) (PF13181)	ER
643867.Ftrac_0324				(PF13181) (PF12895)	ER
643867.Ftrac_3729				(PF00801)	ER
643867.Ftrac_2413				(PF13181)	ER
643867.Ftrac_3384				(PF00801)	ER
643867.Ftrac_0075				(PF13181)	ER
643867.Ftrac_0814				(PF07676)	ER
643867.Ftrac_0703				(PF13181)	ER
643867.Ftrac_0498				(PF13181)	ER
643867.Ftrac_2873				(PF03321)	mitochondrial
643867.Ftrac_0010				(PF13181)	ER
643867.Ftrac_2878				(PF07676)	ER
643867.Ftrac_1741				(PF07676)	ER
643867.Ftrac_3596				(PF04784)	ER
643867.Ftrac_1355				(PF13181)	ER
643867.Ftrac_2455				(PF15902)	ER
643867.Ftrac_3101				(PF13181)	ER
643867.Ftrac_3322				(PF07676)	ER
643867.Ftrac_2858				(PF15902)	ER
643867.Ftrac_0365				(PF15902)	ER
643867.Ftrac_0361				(PF07676)	(ER)
643867.Ftrac_1163				(PF15780)	ER
643867.Ftrac_1161				(PF15902)	ER
643867.Ftrac_1168				(PF01809)	(mitochondrial)
643867.Ftrac_3626				(PF13181)	ER
643867.Ftrac_0201				(PF00801)	ER
643867.Ftrac_1978				(PF00801)	ER
643867.Ftrac_1158				(PF13181)	ER
643867.Ftrac_3637				(PF04784)	ER
643867.Ftrac_3301				(PF00431)	ER
643867.Ftrac_2228				(PF00801)	ER
643867.Ftrac_3156				(PF07676)	ER
643867.Ftrac_3153				(PF00801)	ER
643867.Ftrac_0174				(PF07676)	ER
643867.Ftrac_1951				(PF01030)	ER
643867.Ftrac_3149				(PF00801)	ER
643867.Ftrac_0143				(PF13181)	ER
643867.Ftrac_0146				(PF07676)	ER
643867.Ftrac_1237				(PF07676)	ER
643867.Ftrac_2152				PF05176	ER
643867.Ftrac_3547				(PF13181)	ER
643867.Ftrac_0155				(PF00801)	ER
643867.Ftrac_0151				(PF13181)	ER
643867.Ftrac_1334				(PF13181)	ER
643867.Ftrac_3437				PF15711	ER
643867.Ftrac_1924				(PF13181)	ER
643867.Ftrac_1106				PF10342	ER
643867.Ftrac_2170				(PF00801)	ER
643867.Ftrac_3403				(PF13181)	ER
643867.Ftrac_0192				(PF13181)	ER
643867.Ftrac_0624				(PF16313)	ER
643867.Ftrac_2916				(PF07676)	ER
643867.Ftrac_2913				PF05097	ER
643867.Ftrac_3527				(PF13181)	ER
643867.Ftrac_3258				(PF01809)	ER
643867.Ftrac_2650				(PF16313)	ER
643867.Ftrac_2927				(PF07676)	ER
643867.Ftrac_1901				(PF07676)	ER
643867.Ftrac_1877				(PF00801)	ER
643867.Ftrac_1017				(PF07676)	ER
643867.Ftrac_1010				(PF00801)	ER
643867.Ftrac_3266				(PF12895)	ER
643867.Ftrac_3264				(PF01809)	ER
643867.Ftrac_0260				(PF00801)	ER
643867.Ftrac_0466				(PF16313)	ER
643867.Ftrac_0461				(PF00965)	ER
643867.Ftrac_3328				(PF13429) (PF13181)
643867.Ftrac_2583				(PF13181)	(plastid)
643867.Ftrac_1147				(PF10013)	(mitochondrial); not used
643867.Ftrac_0396				(PF13181)
643867.Ftrac_0806				(PF07676)
643867.Ftrac_0230				(PF13020)
643867.Ftrac_2509				(PF13181)
643867.Ftrac_0232				(PF13271)
643867.Ftrac_1198				(PF03321)
643867.Ftrac_2675				(PF13181)
643867.Ftrac_2983				(PF15780)
643867.Ftrac_1659				(PF03321)
643867.Ftrac_2196				(PF13271)
643867.Ftrac_0024				(PF07676)
643867.Ftrac_0376				(PF07676)
643867.Ftrac_3305				(PF13181)
643867.Ftrac_0347				(PF10504)
643867.Ftrac_1962				(PF13910)
643867.Ftrac_3576				(PF05693)
643867.Ftrac_3786				(PF15902)
643867.Ftrac_2495				(PF07766)
643867.Ftrac_0142				(PF07676)
643867.Ftrac_1305				(PF13181)
643867.Ftrac_3681				(PF13020)
643867.Ftrac_1442				(PF03321)
643867.Ftrac_3505				PF07965
643867.Ftrac_0874				(PF00801)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================