Effective results for Silicibacter sp. TrichCH4B (eggnog40)

Summary

Number of putative secreted proteins: 39
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 39 proteins (1 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
644076.SCH4B_3758(PF02494)(ER)
644076.SCH4B_3379(PF13704)mitochondrial; plastid
644076.SCH4B_1027(PF11977)ER
644076.SCH4B_2000(PF13704)(mitochondrial)
644076.SCH4B_1539(PF13468)ER
644076.SCH4B_3843(PF09994)mitochondrial
644076.SCH4B_4417(PF13683)(mitochondrial)
644076.SCH4B_0117(PF13683)(mitochondrial)
644076.SCH4B_0050(PF13683)(mitochondrial)
644076.SCH4B_1999(PF13704)(ER)
644076.SCH4B_0170(PF13683)(mitochondrial)
644076.SCH4B_0434(PF13704)(ER)
644076.SCH4B_3640(PF13683)
644076.SCH4B_0269(PF07700)
644076.SCH4B_1890(PF13468)
644076.SCH4B_2282(PF14532)
644076.SCH4B_0109(PF13683)
644076.SCH4B_2406(PF02475)
644076.SCH4B_4343(PF09994)
644076.SCH4B_3762(PF13683)
644076.SCH4B_3768(PF09994)
644076.SCH4B_1508(PF07700)
644076.SCH4B_1197(PF08975)
644076.SCH4B_4132(PF16983)
644076.SCH4B_2151(PF06119)
644076.SCH4B_1011(PF13704)
644076.SCH4B_1958(PF14532)
644076.SCH4B_1954PF11781
644076.SCH4B_2040(PF02494)
644076.SCH4B_1965(PF13704)
644076.SCH4B_2470(PF13468)
644076.SCH4B_1607(PF09458)
644076.SCH4B_2656(PF02485)
644076.SCH4B_2002(PF13704)
644076.SCH4B_1138(PF14532)
644076.SCH4B_0084(PF13683)not used
644076.SCH4B_3381(PF02485)
644076.SCH4B_3380(PF13704)
644076.SCH4B_3653(PF13683)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.125 (9/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================