Effective results for Desulfarculus baarsii DSM 2075 (eggnog40)

Summary

Number of putative secreted proteins: 106
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 106 proteins (3 high, 103 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
644282.Deba_0710				(PF13336) (PF02550)	(mitochondrial)
644282.Deba_0365				(PF13188) (PF00989)	ER
644282.Deba_2176				(PF00037)	(mitochondrial)
644282.Deba_3155				(PF00037)	(mitochondrial)
644282.Deba_2616				(PF00989)	ER
644282.Deba_1399				(PF01078)	ER
644282.Deba_0895				PF08068	mitochondrial
644282.Deba_0638				(PF00989)	ER
644282.Deba_1160				(PF00989)	ER
644282.Deba_1622				(PF05189)	(mitochondrial); mitochondrial
644282.Deba_0392				(PF13188)	ER
644282.Deba_0402				(PF00989)	ER
644282.Deba_0089				(PF00989)	ER
644282.Deba_2484				(PF01078)	ER
644282.Deba_1743				(PF00037)	ER
644282.Deba_2125				(PF13188)	(ER)
644282.Deba_2115				(PF13534)	ER
644282.Deba_2117				(PF00037)	ER
644282.Deba_2845				(PF13188)	ER
644282.Deba_2258				(PF00989)	ER
644282.Deba_2407				(PF13428)	ER
644282.Deba_0588				(PF13428)	mitochondrial; (mitochondrial)
644282.Deba_1519				(PF00037)	(mitochondrial); mitochondrial
644282.Deba_1436				(PF12038)	(ER)
644282.Deba_2361				(PF01855)	mitochondrial; (mitochondrial)
644282.Deba_0046				(PF13188) (PF00989)
644282.Deba_0843				(PF13551)	(ER)
644282.Deba_0130				(PF13188) (PF00989)
644282.Deba_0630				(PF13188) (PF00989)
644282.Deba_2836				(PF02460)	(mitochondrial)
644282.Deba_2833				(PF13551)	(ER)
644282.Deba_0886				(PF00037) (PF01855)
644282.Deba_1752				(PF00037) (PF01855)
644282.Deba_0155				(PF02550) (PF13336)
644282.Deba_0403				(PF13188) (PF00989)
644282.Deba_0084				(PF02550) (PF13336)
644282.Deba_3273				(PF13336) (PF02550)
644282.Deba_3272				(PF02550) (PF13336)
644282.Deba_3121				(PF13551)	(ER)
644282.Deba_2246				(PF13551)	(ER)
644282.Deba_1270				(PF13551)	(ER)
644282.Deba_0019				(PF13188) (PF00989)
644282.Deba_0493				(PF13551)	(ER)
644282.Deba_0495				(PF13551)	(ER)
644282.Deba_0269				(PF13188) (PF00989)
644282.Deba_1723				(PF13551)	(ER)
644282.Deba_2175				(PF00037)
644282.Deba_0668				(PF00989)
644282.Deba_0787				(PF00037)
644282.Deba_0117				(PF00162)
644282.Deba_2998				(PF13188)
644282.Deba_1398				(PF01078)
644282.Deba_0959				(PF00037)
644282.Deba_2157				(PF00989)
644282.Deba_0132				(PF00989)
644282.Deba_1953				(PF01855)
644282.Deba_2016				(PF02985)
644282.Deba_0141				(PF03692)
644282.Deba_0565				(PF13534)
644282.Deba_3053				(PF00989)
644282.Deba_0094				(PF02943)
644282.Deba_2839				(PF00037)
644282.Deba_2137				(PF13534)
644282.Deba_0627				(PF13534)
644282.Deba_2134				(PF13534)
644282.Deba_2132				(PF00037)
644282.Deba_2723				(PF03692)
644282.Deba_1290				(PF00989)
644282.Deba_0985				(PF13534)
644282.Deba_1967				(PF00162)
644282.Deba_3294				(PF00989)
644282.Deba_0180				(PF01980)
644282.Deba_1101				PF00412
644282.Deba_2856				(PF00989)
644282.Deba_2851				(PF01855)
644282.Deba_1038				(PF01855)
644282.Deba_2452				(PF00989)
644282.Deba_2120				(PF00037)
644282.Deba_0372				PF08213	not used
644282.Deba_2207				(PF13428)
644282.Deba_0414				(PF00037)
644282.Deba_2848				(PF03692)
644282.Deba_2847				(PF03692)
644282.Deba_2840				(PF00037)
644282.Deba_0349				(PF00989)
644282.Deba_1832				(PF02732)
644282.Deba_1120				(PF02985)
644282.Deba_2688				(PF13188)
644282.Deba_2261				(PF13188)
644282.Deba_1323				(PF00989)
644282.Deba_1490				(PF00989)
644282.Deba_2671				(PF03692)
644282.Deba_2675				(PF01980)
644282.Deba_2520				(PF01078)
644282.Deba_3202				(PF01855)
644282.Deba_1276				(PF03692)
644282.Deba_3210				(PF00989)
644282.Deba_2150				(PF00037)
644282.Deba_0869				(PF00037)
644282.Deba_0862				(PF00989)
644282.Deba_0312				(PF01980)
644282.Deba_1739				(PF03692)
644282.Deba_0488				(PF00037)
644282.Deba_0261				(PF00037)
644282.Deba_3001				(PF00037)
644282.Deba_2519				(PF01078)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================