Effective results for Jonquetella anthropi E3_33 E1 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 42 proteins (13 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
645512.GCWU000246_00809				PF03577	ER
645512.GCWU000246_00208				(PF05684)	(ER)
645512.GCWU000246_00151				(PF13518)	(mitochondrial)
645512.GCWU000246_00094				PF03577	ER
645512.GCWU000246_01737				(PF00137)	ER
645512.GCWU000246_00615				(PF05684)	ER
645512.GCWU000246_01396				PF03577	ER
645512.GCWU000246_01397				PF03577	ER
645512.GCWU000246_00116				(PF13518)	(mitochondrial)
645512.GCWU000246_01508				PF03577	ER
645512.GCWU000246_01515				PF02987	ER
645512.GCWU000246_00806				(PF00137)	(ER)
645512.GCWU000246_01811				PF03577	ER
645512.GCWU000246_00490				(PF00137)	ER
645512.GCWU000246_00782				PF03577	ER
645512.GCWU000246_01807				PF03577	ER
645512.GCWU000246_01000				(PF07837) (PF02971)
645512.GCWU000246_00165				(PF07837) (PF02971)
645512.GCWU000246_00466				(PF13518)	plastid
645512.GCWU000246_01002				(PF04961)
645512.GCWU000246_00991				(PF13518)
645512.GCWU000246_01675				PF01129
645512.GCWU000246_01583				(PF03382)
645512.GCWU000246_01582				(PF03382)
645512.GCWU000246_01580				(PF03382)
645512.GCWU000246_01587				(PF03382)
645512.GCWU000246_01586				(PF03382)
645512.GCWU000246_01585				(PF03382)
645512.GCWU000246_00092				PF12873
645512.GCWU000246_01736				(PF01496)
645512.GCWU000246_01738				(PF01991)
645512.GCWU000246_00546				(PF04961)
645512.GCWU000246_01579				(PF03382)
645512.GCWU000246_00369				(PF13518)
645512.GCWU000246_00008				PF01129
645512.GCWU000246_00647				(PF07787)
645512.GCWU000246_00790				(PF13518)	not used
645512.GCWU000246_00491				(PF01496)
645512.GCWU000246_00497				PF03577
645512.GCWU000246_00472				(PF13518)
645512.GCWU000246_00861				(PF13518)
645512.GCWU000246_01028				(PF14336)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================