Effective results for Syntrophobotulus glycolicus DSM 8271 (eggnog40)

Summary

Number of putative secreted proteins: 54
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 54 proteins (25 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
645991.Sgly_2786				PF00148	(ER)
645991.Sgly_1494				(PF02421) (PF07670)	(plastid)
645991.Sgly_0996				PF00148	(mitochondrial)
645991.Sgly_0115				(PF02421) (PF07670)	(plastid)
645991.Sgly_2028				(PF07670)	ER
645991.Sgly_1678				(PF07670)	ER
645991.Sgly_1679				(PF07670)	ER
645991.Sgly_2188				(PF02256)	(mitochondrial)
645991.Sgly_2318				(PF07670)	ER
645991.Sgly_2773				PF00148	(mitochondrial)
645991.Sgly_1531				(PF02421) (PF07670)
645991.Sgly_2842				(PF00543)	(mitochondrial)
645991.Sgly_0966				(PF00543)	(mitochondrial)
645991.Sgly_2185				(PF02256)	(mitochondrial)
645991.Sgly_2744				PF00148	(mitochondrial)
645991.Sgly_1263				(PF02421) (PF07670)
645991.Sgly_0801				(PF00543)	(mitochondrial)
645991.Sgly_2792				PF00148	(mitochondrial)
645991.Sgly_1213				(PF02421) (PF07670)
645991.Sgly_2787				PF00148
645991.Sgly_2852				(PF00543)
645991.Sgly_2851				(PF00543)
645991.Sgly_2850				PF00148
645991.Sgly_2840				PF00148
645991.Sgly_2843				(PF00543)
645991.Sgly_2848				PF00148
645991.Sgly_1830				(PF00543)
645991.Sgly_1608				(PF04432)
645991.Sgly_0994				PF00148
645991.Sgly_0995				PF00148
645991.Sgly_2914				(PF02256)
645991.Sgly_1560				(PF03031)
645991.Sgly_0967				(PF00543)
645991.Sgly_2905				(PF07670)
645991.Sgly_2906				(PF02421)
645991.Sgly_2679				(PF00543)
645991.Sgly_1597				PF07959
645991.Sgly_2743				PF00148
645991.Sgly_0993				PF00148
645991.Sgly_1436				PF00148
645991.Sgly_1437				PF00148
645991.Sgly_2835				PF00148
645991.Sgly_2836				PF00148
645991.Sgly_2839				PF00148
645991.Sgly_1508				(PF04432)
645991.Sgly_2562				(PF13151)
645991.Sgly_0800				(PF00543)
645991.Sgly_2778				PF00148
645991.Sgly_2772				PF00148
645991.Sgly_2776				PF00148
645991.Sgly_2777				PF00148
645991.Sgly_2775				PF00148
645991.Sgly_2793				PF00148
645991.Sgly_0972				(PF00543)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================