Effective results for Truepera radiovictrix DSM 17093 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 35 proteins (4 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
649638.Trad_0896				(PF01344) (PF13964)	ER
649638.Trad_0980				(PF01344) (PF13964)	ER; (ER)
649638.Trad_2164				(PF06695)	ER
649638.Trad_2371				(PF06695)	ER
649638.Trad_2908				PF01036	ER
649638.Trad_2253				(PF14397)	mitochondrial; (mitochondrial)
649638.Trad_0104				(PF14397)	(mitochondrial)
649638.Trad_1251				(PF01344)	ER
649638.Trad_1760				(PF01186)	(ER)
649638.Trad_0497				(PF01344)	ER
649638.Trad_0171				PF01036	(ER)
649638.Trad_1798				(PF12724)	(mitochondrial)
649638.Trad_0374				PF10343	(mitochondrial)
649638.Trad_2924				(PF00685)	(mitochondrial)
649638.Trad_2944				PF01036
649638.Trad_0613				(PF14397)
649638.Trad_1480				(PF12724)
649638.Trad_2021				(PF01991)
649638.Trad_0668				(PF00685)
649638.Trad_2362				(PF14397)
649638.Trad_1218				(PF09949)
649638.Trad_1219				(PF09949)
649638.Trad_2930				(PF04930)
649638.Trad_1785				(PF12724)
649638.Trad_1780				(PF12724)
649638.Trad_1250				(PF00685)
649638.Trad_2445				(PF14328)
649638.Trad_1082				(PF00025)
649638.Trad_1634				(PF12724)
649638.Trad_2723				(PF00685)
649638.Trad_2724				(PF00685)
649638.Trad_2221				(PF05704)
649638.Trad_2711				(PF13020)
649638.Trad_1198				(PF13020)
649638.Trad_2177				(PF10013)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================