Metamenu

Effective results for Slackia exigua ATCC 700122 (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 72 proteins (40 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
649764.HMPREF0762_01544PF00890mitochondrial; (mitochondrial)
649764.HMPREF0762_00151PF00890(mitochondrial)
649764.HMPREF0762_01179PF00890ER; (ER)
649764.HMPREF0762_00636(PF02361)(ER)
649764.HMPREF0762_01574PF00890(mitochondrial)
649764.HMPREF0762_01518(PF02361)ER
649764.HMPREF0762_01338(PF02361)ER
649764.HMPREF0762_01308(PF14512)(mitochondrial)
649764.HMPREF0762_02019(PF02361)ER
649764.HMPREF0762_00623PF00890mitochondrial
649764.HMPREF0762_01916(PF02361)(ER); ER
649764.HMPREF0762_01281PF00890(ER)
649764.HMPREF0762_01131(PF02361)(ER)
649764.HMPREF0762_00407(PF02361)ER
649764.HMPREF0762_01439(PF00185) (PF02729)
649764.HMPREF0762_02061(PF00185) (PF02729)
649764.HMPREF0762_01034(PF00185) (PF02729)
649764.HMPREF0762_00490PF00890(mitochondrial)
649764.HMPREF0762_01684PF00890(plastid)
649764.HMPREF0762_00698PF00890(mitochondrial)
649764.HMPREF0762_00040(PF00185) (PF02729)
649764.HMPREF0762_00538(PF02873)(plastid)
649764.HMPREF0762_01491PF00890(mitochondrial)
649764.HMPREF0762_01255(PF00185) (PF02729)
649764.HMPREF0762_01611PF00890(ER)
649764.HMPREF0762_00387PF00890(ER)
649764.HMPREF0762_00289(PF00185) (PF02729)
649764.HMPREF0762_01890PF12873
649764.HMPREF0762_01897(PF01128)
649764.HMPREF0762_01431PF00890
649764.HMPREF0762_01760(PF01128)
649764.HMPREF0762_02051PF00890
649764.HMPREF0762_01376(PF02361)
649764.HMPREF0762_00806(PF02361)
649764.HMPREF0762_01967PF00890
649764.HMPREF0762_01182PF00890
649764.HMPREF0762_01746(PF01128)
649764.HMPREF0762_00631PF00890
649764.HMPREF0762_00736(PF02361)
649764.HMPREF0762_00319(PF02361)
649764.HMPREF0762_01504PF00890
649764.HMPREF0762_01698PF00890
649764.HMPREF0762_01682PF00890
649764.HMPREF0762_01688(PF00209)
649764.HMPREF0762_00469(PF02361)
649764.HMPREF0762_00068PF00890
649764.HMPREF0762_00687(PF00209)
649764.HMPREF0762_00689(PF00209)
649764.HMPREF0762_01234PF00890
649764.HMPREF0762_01529(PF14512)
649764.HMPREF0762_01654PF00890
649764.HMPREF0762_01275PF00890
649764.HMPREF0762_00678PF00890
649764.HMPREF0762_00990PF00890
649764.HMPREF0762_00845(PF00209)
649764.HMPREF0762_01493PF00890
649764.HMPREF0762_01102PF00890
649764.HMPREF0762_01484PF00890
649764.HMPREF0762_01068PF00890
649764.HMPREF0762_01066PF00890
649764.HMPREF0762_01478PF00890
649764.HMPREF0762_01581PF00890
649764.HMPREF0762_01728(PF00209)
649764.HMPREF0762_01126(PF02361)
649764.HMPREF0762_00721(PF02873)
649764.HMPREF0762_01917PF06911
649764.HMPREF0762_01044PF00890
649764.HMPREF0762_00647PF00890
649764.HMPREF0762_00397(PF02361)
649764.HMPREF0762_00386PF00890
649764.HMPREF0762_01445PF00890
649764.HMPREF0762_01441PF00890

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================