Metamenu

Effective results for Aerococcus viridans ATCC 11563 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 21 proteins (0 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
655812.HMPREF0061_0514(PF02844) (PF02843)(mitochondrial)
655812.HMPREF0061_0684(PF02844) (PF02843)
655812.HMPREF0061_1446(PF00268)
655812.HMPREF0061_1445(PF00268)
655812.HMPREF0061_0520(PF13507)
655812.HMPREF0061_0083(PF08357)
655812.HMPREF0061_0502(PF04525)
655812.HMPREF0061_1476(PF01813)
655812.HMPREF0061_1479(PF01990)
655812.HMPREF0061_1478(PF16886)
655812.HMPREF0061_0989(PF04525)
655812.HMPREF0061_1483(PF01496)
655812.HMPREF0061_1480(PF01992)
655812.HMPREF0061_0285(PF00268)
655812.HMPREF0061_1028(PF00268)
655812.HMPREF0061_0690(PF13507)
655812.HMPREF0061_0909(PF01990)
655812.HMPREF0061_0906(PF01992)
655812.HMPREF0061_0907(PF01496)
655812.HMPREF0061_0913(PF01813)
655812.HMPREF0061_0911(PF16886)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================