Effective results for Mesotoga prima MesG1.Ag.4.2 (eggnog40)

Summary

Number of putative secreted proteins: 59
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 59 proteins (9 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
660470.ThebaDRAFT_2538				(PF04998) (PF00623) (PF00562)	(ER)
660470.ThebaDRAFT_0806				PF03577	ER
660470.ThebaDRAFT_0805				PF03577	ER
660470.ThebaDRAFT_0809				PF03577	ER
660470.ThebaDRAFT_0348				PF03577	ER
660470.ThebaDRAFT_2188				(PF08843)	(mitochondrial)
660470.ThebaDRAFT_0909				(PF09394)	ER
660470.ThebaDRAFT_1478				(PF12483)	ER
660470.ThebaDRAFT_0251				PF03577	ER
660470.ThebaDRAFT_2249				(PF09394)	ER
660470.ThebaDRAFT_1451				(PF14512)	(mitochondrial)
660470.ThebaDRAFT_0980				(PF10142)	(mitochondrial)
660470.ThebaDRAFT_0347				PF03577	ER
660470.ThebaDRAFT_2568				(PF02275)	ER
660470.ThebaDRAFT_0782				(PF09394)	ER
660470.ThebaDRAFT_0487				(PF07837) (PF02971)
660470.ThebaDRAFT_2199				(PF02275)	(plastid)
660470.ThebaDRAFT_0110				(PF04998) (PF00623)
660470.ThebaDRAFT_0715				(PF12724)	(mitochondrial)
660470.ThebaDRAFT_1807				(PF11074)	(mitochondrial)
660470.ThebaDRAFT_1201				(PF01535) PF12862
660470.ThebaDRAFT_2172				(PF08843)	(mitochondrial)
660470.ThebaDRAFT_1213				(PF03266)
660470.ThebaDRAFT_0977				(PF14512)
660470.ThebaDRAFT_0010				(PF02915)
660470.ThebaDRAFT_2453				(PF03437)
660470.ThebaDRAFT_2454				(PF03437)
660470.ThebaDRAFT_0359				(PF02915)
660470.ThebaDRAFT_2198				(PF02275)
660470.ThebaDRAFT_1895				(PF02317)
660470.ThebaDRAFT_0111				(PF00562)
660470.ThebaDRAFT_0934				(PF03437)
660470.ThebaDRAFT_2465				(PF02915)
660470.ThebaDRAFT_1728				(PF12724)
660470.ThebaDRAFT_2386				(PF08843)
660470.ThebaDRAFT_1861				(PF01637)
660470.ThebaDRAFT_0409				(PF12646)
660470.ThebaDRAFT_0872				(PF14249)
660470.ThebaDRAFT_2347				(PF12724)
660470.ThebaDRAFT_1902				(PF02317)
660470.ThebaDRAFT_0643				(PF02915)
660470.ThebaDRAFT_2004				(PF12724)
660470.ThebaDRAFT_0864				(PF00862)
660470.ThebaDRAFT_2353				(PF01637)
660470.ThebaDRAFT_2385				(PF08843)
660470.ThebaDRAFT_0072				(PF09419)
660470.ThebaDRAFT_1581				(PF09752)
660470.ThebaDRAFT_1927				(PF08309)
660470.ThebaDRAFT_1926				(PF08309)
660470.ThebaDRAFT_1924				(PF08309)
660470.ThebaDRAFT_1921				(PF08309)
660470.ThebaDRAFT_1559				(PF08843)
660470.ThebaDRAFT_0998				PF03577
660470.ThebaDRAFT_2377				(PF08843)
660470.ThebaDRAFT_2376				(PF08843)
660470.ThebaDRAFT_1122				(PF01637)
660470.ThebaDRAFT_2419				(PF02915)
660470.ThebaDRAFT_1200				PF12862
660470.ThebaDRAFT_0788				(PF02915)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================