Metamenu

Effective results for Candidatus Regiella insecticola LSR1 (eggnog40)

Summary

Number of putative secreted proteins: 111
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 111 proteins (105 high, 6 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
663321.REG_1070PF05208ER
663321.REG_1443PF13359ER
663321.REG_0270PF13359
663321.REG_0271PF13613
663321.REG_0385PF01150
663321.REG_0473PF13359
663321.REG_0474PF13613
663321.REG_1045PF13359
663321.REG_1046PF13613
663321.REG_1040PF13613
663321.REG_1041PF13359
663321.REG_0249PF13613
663321.REG_0248PF13359
663321.REG_0398PF13359
663321.REG_0731PF13613
663321.REG_0730PF13359
663321.REG_1071PF13359
663321.REG_1072PF13613
663321.REG_1678(PF03538)
663321.REG_1068PF13359
663321.REG_1067PF13613
663321.REG_1247PF13613
663321.REG_1248PF13359
663321.REG_0756PF13613
663321.REG_0354PF13613
663321.REG_1127PF13613
663321.REG_1123PF13359
663321.REG_1122PF13613
663321.REG_1128PF13359
663321.REG_0630PF13359
663321.REG_0635PF13359
663321.REG_0636PF13613
663321.REG_0290PF13613
663321.REG_0291PF13359
663321.REG_0744PF13359
663321.REG_0745PF13613
663321.REG_0747PF13613
663321.REG_0191PF13613
663321.REG_0192PF13359
663321.REG_0994PF13359
663321.REG_0997PF13613
663321.REG_0996PF13359
663321.REG_0993PF13613
663321.REG_0775PF13359
663321.REG_0776PF13613
663321.REG_0177PF13359
663321.REG_0176PF13613
663321.REG_0172PF13359
663321.REG_0171PF13613
663321.REG_1031PF13359
663321.REG_1032PF13613
663321.REG_1962(PF04383)
663321.REG_0980PF13359
663321.REG_0762PF13359
663321.REG_0763PF13613
663321.REG_0945(PF04383)
663321.REG_0942PF13359
663321.REG_0941PF13613
663321.REG_1022PF13613
663321.REG_1021PF13359
663321.REG_1118PF13613
663321.REG_1117PF13359
663321.REG_0979PF13613
663321.REG_0089PF13613
663321.REG_0572PF13359
663321.REG_0571PF13613
663321.REG_0885PF13359
663321.REG_0884PF13613
663321.REG_0360PF13359
663321.REG_0361PF13613
663321.REG_0090PF13359
663321.REG_0568PF13359
663321.REG_0567PF13613
663321.REG_0892PF13613
663321.REG_0893PF13359
663321.REG_1941(PF07720)
663321.REG_0559PF13613
663321.REG_1958(PF07798)
663321.REG_0397PF13613
663321.REG_0305PF13613
663321.REG_0306PF13359
663321.REG_0124PF13613
663321.REG_0125PF13359
663321.REG_0911PF13359
663321.REG_0910PF13613
663321.REG_1157(PF07798)
663321.REG_1080PF13359
663321.REG_1081PF13613
663321.REG_0209PF13359
663321.REG_0208PF13613
663321.REG_0597PF13359
663321.REG_0596PF13613
663321.REG_0115PF13359
663321.REG_0114PF13613
663321.REG_0687PF13359
663321.REG_0686PF13613
663321.REG_0682PF13359
663321.REG_0629PF13613
663321.REG_0586PF13613
663321.REG_0587PF13359
663321.REG_0078PF13613
663321.REG_0079PF13359
663321.REG_0683PF13613
663321.REG_1194PF13613
663321.REG_1195PF13359
663321.REG_1190PF13613
663321.REG_1191PF13359
663321.REG_0464PF13359
663321.REG_0463PF13613
663321.REG_0489PF13359
663321.REG_0488PF13613

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================