Effective results for Spirochaeta thermophila DSM 6192 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 63 proteins (2 high, 61 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
665571.STHERM_c04060(PF01670)ER
665571.STHERM_c20720(PF00872)(mitochondrial)
665571.STHERM_c20650(PF01670)ER
665571.STHERM_c20640(PF00759)ER
665571.STHERM_c11710(PF00872)(mitochondrial)
665571.STHERM_c18710(PF01442)ER
665571.STHERM_c17340(PF04041)mitochondrial
665571.STHERM_c05900(PF00872)mitochondrial
665571.STHERM_c08530(PF00331)(ER)
665571.STHERM_c15090(PF00331)ER
665571.STHERM_c17690(PF00331)ER
665571.STHERM_c16760(PF07719)ER
665571.STHERM_c17680(PF00331)ER
665571.STHERM_c15980PF07821ER
665571.STHERM_c18930(PF00331)ER
665571.STHERM_c15300(PF16317)ER
665571.STHERM_c09010(PF07719)ER
665571.STHERM_c08720(PF07719)ER
665571.STHERM_c13330(PF00872)(mitochondrial)
665571.STHERM_c16540(PF02544)ER
665571.STHERM_c16430(PF00759)ER
665571.STHERM_c07910(PF00872)(mitochondrial)
665571.STHERM_c15960(PF16561)ER
665571.STHERM_c01760(PF16561)ER
665571.STHERM_c20630(PF00759)ER
665571.STHERM_c21390(PF00872)(mitochondrial)
665571.STHERM_c21380(PF00872)(mitochondrial)
665571.STHERM_c20710(PF00872)(mitochondrial)
665571.STHERM_c13450(PF00872)(mitochondrial)
665571.STHERM_c00050(PF00872)(mitochondrial)
665571.STHERM_c15500(PF00872)(mitochondrial)
665571.STHERM_c22570(PF00872)(mitochondrial)
665571.STHERM_c13340(PF00872)(mitochondrial)
665571.STHERM_c07900(PF00872)(mitochondrial)
665571.STHERM_c02660(PF00759)(mitochondrial)
665571.STHERM_c11720(PF00872)(mitochondrial)
665571.STHERM_c12140(PF06968)
665571.STHERM_c17460(PF05168)
665571.STHERM_c20920(PF02943)
665571.STHERM_c19920(PF07719)
665571.STHERM_c06260(PF02906)
665571.STHERM_c03360(PF01875)
665571.STHERM_c01460(PF06968)
665571.STHERM_c16350(PF02906)
665571.STHERM_c03180(PF05168)
665571.STHERM_c00870(PF04041)
665571.STHERM_c12640(PF07719)
665571.STHERM_c17360(PF04041)
665571.STHERM_c13670(PF05168)
665571.STHERM_c06620(PF07719)
665571.STHERM_c15230(PF05168)
665571.STHERM_c12330(PF02906)
665571.STHERM_c18000(PF06968)
665571.STHERM_c10840(PF07719)
665571.STHERM_c15560(PF05168)
665571.STHERM_c16920(PF05168)
665571.STHERM_c16070(PF01875)
665571.STHERM_c13740(PF02906)
665571.STHERM_c17990(PF06968)
665571.STHERM_c00560(PF16314)
665571.STHERM_c00760PF14360
665571.STHERM_c00940(PF04041)
665571.STHERM_c12360(PF02906)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================