Metamenu

Effective results for Afipia sp. 1NLS2 (eggnog40)

Summary

Number of putative secreted proteins: 126
- Predicted by T4SEpre: 96
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 41 proteins (1 high, 40 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
666684.AfiDRAFT_0899(PF07732) (PF14342)ER
666684.AfiDRAFT_0035+PF13405(mitochondrial); plastid
666684.AfiDRAFT_0573+ER
666684.AfiDRAFT_2017+ER
666684.AfiDRAFT_0565+(ER)
666684.AfiDRAFT_0568+(ER)
666684.AfiDRAFT_0097+(mitochondrial); plastid
666684.AfiDRAFT_2371(PF14295)ER
666684.AfiDRAFT_0144+ER
666684.AfiDRAFT_2781(PF06764)mitochondrial
666684.AfiDRAFT_0223+ER
666684.AfiDRAFT_1314(PF02683)ER
666684.AfiDRAFT_2773(PF02683)ER
666684.AfiDRAFT_3800+(ER)
666684.AfiDRAFT_0599+ER
666684.AfiDRAFT_1085(PF07732)mitochondrial
666684.AfiDRAFT_2437+mitochondrial
666684.AfiDRAFT_0213+ER
666684.AfiDRAFT_0100+ER
666684.AfiDRAFT_0078+(mitochondrial)
666684.AfiDRAFT_0466(PF07732)ER
666684.AfiDRAFT_2539(PF07732)(mitochondrial)
666684.AfiDRAFT_0863(PF03988)ER; (ER)
666684.AfiDRAFT_3108+ER
666684.AfiDRAFT_3614+mitochondrial
666684.AfiDRAFT_2250+mitochondrial
666684.AfiDRAFT_0675(PF00036)ER
666684.AfiDRAFT_0877+mitochondrial
666684.AfiDRAFT_2414(PF04343)(mitochondrial)
666684.AfiDRAFT_2733+mitochondrial; (plastid)
666684.AfiDRAFT_2067+(mitochondrial)
666684.AfiDRAFT_0640+mitochondrial
666684.AfiDRAFT_3701+ER
666684.AfiDRAFT_2387+ER
666684.AfiDRAFT_2078+mitochondrial; (mitochondrial)
666684.AfiDRAFT_0025(PF02683)ER
666684.AfiDRAFT_0028(PF07732)ER
666684.AfiDRAFT_0738(PF02683)(ER)
666684.AfiDRAFT_1816+ER
666684.AfiDRAFT_3139+ER
666684.AfiDRAFT_1072(PF14342)ER
666684.AfiDRAFT_0906+mitochondrial
666684.AfiDRAFT_0031(PF07732)ER
666684.AfiDRAFT_0611+(ER); (mitochondrial)
666684.AfiDRAFT_3248+ER
666684.AfiDRAFT_2918+ER
666684.AfiDRAFT_3099(PF03404)(mitochondrial)
666684.AfiDRAFT_3390+ER
666684.AfiDRAFT_2029+mitochondrial
666684.AfiDRAFT_3261(PF02683)ER
666684.AfiDRAFT_0994(PF13871) (PF13872)(plastid)
666684.AfiDRAFT_1135+mitochondrial; (mitochondrial)
666684.AfiDRAFT_3063+ER
666684.AfiDRAFT_2135+mitochondrial
666684.AfiDRAFT_1373(PF13871) (PF13872)
666684.AfiDRAFT_0814(PF13871) (PF13872)
666684.AfiDRAFT_3770+(mitochondrial)
666684.AfiDRAFT_2244+(mitochondrial)
666684.AfiDRAFT_0009(PF04343)(mitochondrial)
666684.AfiDRAFT_2118+(mitochondrial)
666684.AfiDRAFT_0993(PF14216)(mitochondrial)
666684.AfiDRAFT_2611+(mitochondrial)
666684.AfiDRAFT_1367(PF07732)
666684.AfiDRAFT_2823+
666684.AfiDRAFT_1021(PF02683)
666684.AfiDRAFT_0081+
666684.AfiDRAFT_1762+
666684.AfiDRAFT_1568(PF03988)
666684.AfiDRAFT_1565(PF03988)
666684.AfiDRAFT_3554+
666684.AfiDRAFT_2379+
666684.AfiDRAFT_0142(PF01442)
666684.AfiDRAFT_3784+
666684.AfiDRAFT_0318(PF09585)
666684.AfiDRAFT_0905(PF07732)
666684.AfiDRAFT_2172+
666684.AfiDRAFT_2558+
666684.AfiDRAFT_0209+
666684.AfiDRAFT_0119+
666684.AfiDRAFT_2234+
666684.AfiDRAFT_1520+
666684.AfiDRAFT_0456(PF01786)
666684.AfiDRAFT_0858(PF03988)
666684.AfiDRAFT_0323+
666684.AfiDRAFT_3751(PF06764)
666684.AfiDRAFT_0214+
666684.AfiDRAFT_1991(PF09585)
666684.AfiDRAFT_0003+
666684.AfiDRAFT_0005+
666684.AfiDRAFT_0478+
666684.AfiDRAFT_0477+
666684.AfiDRAFT_2441+
666684.AfiDRAFT_3739+
666684.AfiDRAFT_2392+
666684.AfiDRAFT_0246+
666684.AfiDRAFT_2897(PF03404)
666684.AfiDRAFT_1924+
666684.AfiDRAFT_1384+
666684.AfiDRAFT_3405+
666684.AfiDRAFT_1491+
666684.AfiDRAFT_1253(PF03404)
666684.AfiDRAFT_0720+
666684.AfiDRAFT_2865+
666684.AfiDRAFT_2861+
666684.AfiDRAFT_1718+
666684.AfiDRAFT_0820+
666684.AfiDRAFT_1241(PF04343)
666684.AfiDRAFT_2095+
666684.AfiDRAFT_2096+
666684.AfiDRAFT_2452(PF03404)
666684.AfiDRAFT_3466+
666684.AfiDRAFT_2026+
666684.AfiDRAFT_1344+
666684.AfiDRAFT_1342+
666684.AfiDRAFT_1646+
666684.AfiDRAFT_0748+
666684.AfiDRAFT_0601+
666684.AfiDRAFT_2596+
666684.AfiDRAFT_0999+
666684.AfiDRAFT_0598+
666684.AfiDRAFT_2323(PF04343)
666684.AfiDRAFT_1353+
666684.AfiDRAFT_0776(PF13455)
666684.AfiDRAFT_3091+
666684.AfiDRAFT_0502+
666684.AfiDRAFT_0519+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.8 (18/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================