Effective results for Comamonas testosteroni CNB-2 (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 15 proteins (3 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
688245.CtCNB1_3035(PF02201)mitochondrial; plastid
688245.CtCNB1_2754(PF00777)mitochondrial
688245.CtCNB1_1716(PF02178)(mitochondrial)
688245.CtCNB1_2766(PF14307)(mitochondrial)
688245.CtCNB1_4014(PF13668)(mitochondrial)
688245.CtCNB1_1904PF11937ER
688245.CtCNB1_4013PF11937
688245.CtCNB1_4789(PF02201)
688245.CtCNB1_2528(PF15588)
688245.CtCNB1_4192(PF08417)
688245.CtCNB1_1623(PF13668)
688245.CtCNB1_0734(PF11969)
688245.CtCNB1_2764(PF14307)
688245.CtCNB1_1987(PF13668)
688245.CtCNB1_1988PF11937

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.875 (7/8 KEGG proteins)

Individual results for each secretion system

Parameters:

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EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================