Metamenu

Effective results for Sphingobium chlorophenolicum L-1 (eggnog40)

Summary

Number of putative secreted proteins: 156
- Predicted by T4SEpre: 55
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 107 proteins (0 high, 107 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
690566.Sphch_1907+ER
690566.Sphch_1596+ER
690566.Sphch_0267(PF00593)ER
690566.Sphch_0513(PF00593)mitochondrial
690566.Sphch_0881+ER
690566.Sphch_0334(PF00593)(mitochondrial)
690566.Sphch_2131(PF00593)ER
690566.Sphch_3170(PF00593)ER
690566.Sphch_3773(PF00593)(ER)
690566.Sphch_0455(PF00593)ER
690566.Sphch_0983(PF00593)ER
690566.Sphch_2699(PF01697)mitochondrial
690566.Sphch_2588(PF00593)ER
690566.Sphch_2742+ER
690566.Sphch_3985(PF00593)(mitochondrial)
690566.Sphch_3551(PF00593)ER
690566.Sphch_0067+(mitochondrial)
690566.Sphch_0680(PF00593)(ER)
690566.Sphch_2110(PF00593)ER
690566.Sphch_2116(PF00593)ER
690566.Sphch_1026+ER
690566.Sphch_2753+(mitochondrial)
690566.Sphch_3377(PF00593)ER
690566.Sphch_3099(PF00593)(mitochondrial)
690566.Sphch_0621+ER
690566.Sphch_3561(PF00593)ER
690566.Sphch_3419(PF00593)(ER)
690566.Sphch_4039(PF00593)ER; plastid
690566.Sphch_0557+mitochondrial
690566.Sphch_3318(PF00593)ER
690566.Sphch_2571(PF00593)mitochondrial
690566.Sphch_2776(PF00593)ER
690566.Sphch_3958(PF00593)mitochondrial
690566.Sphch_0958+ER
690566.Sphch_4027(PF00593)ER
690566.Sphch_0149(PF00593)ER
690566.Sphch_0148(PF00593)ER
690566.Sphch_2544(PF00593)(ER)
690566.Sphch_3947(PF00593)(mitochondrial)
690566.Sphch_3120(PF00593)ER
690566.Sphch_0153(PF00593)ER
690566.Sphch_3104+(mitochondrial)
690566.Sphch_1175(PF06455)ER
690566.Sphch_2155(PF00593)ER; (mitochondrial)
690566.Sphch_2087(PF00593)ER; (ER)
690566.Sphch_2551(PF00593)(mitochondrial); (plastid)
690566.Sphch_3662+mitochondrial; (mitochondrial)
690566.Sphch_1994(PF00593)ER
690566.Sphch_3595(PF13469)(ER)
690566.Sphch_3845(PF00593)mitochondrial; ER
690566.Sphch_3685(PF00593)ER
690566.Sphch_3699+(mitochondrial); (plastid)
690566.Sphch_3372(PF00593)ER
690566.Sphch_0167(PF00593)(ER)
690566.Sphch_0580(PF00593)ER
690566.Sphch_3328(PF00593)ER
690566.Sphch_2489(PF00593)mitochondrial
690566.Sphch_3856(PF00593)(ER)
690566.Sphch_3456(PF00593)ER
690566.Sphch_3457(PF00593)mitochondrial
690566.Sphch_0356+ER
690566.Sphch_3223+ER
690566.Sphch_0528+ER
690566.Sphch_3261(PF07110)mitochondrial
690566.Sphch_3465(PF00593)ER
690566.Sphch_3008(PF00593)ER
690566.Sphch_3004(PF00593)ER
690566.Sphch_1849(PF00593)(ER)
690566.Sphch_2501(PF00593)ER
690566.Sphch_3908(PF00593)ER
690566.Sphch_3874(PF00593)ER
690566.Sphch_4050(PF00593)(ER); ER
690566.Sphch_1735(PF00593)ER
690566.Sphch_1394(PF00593)ER
690566.Sphch_2607(PF00593)(ER)
690566.Sphch_3648(PF00593)ER
690566.Sphch_3806(PF00593)ER
690566.Sphch_3737(PF00593)mitochondrial
690566.Sphch_0360+ER; (mitochondrial)
690566.Sphch_2498(PF00593)ER; (ER)
690566.Sphch_3815(PF00593)ER
690566.Sphch_3818(PF00593)(ER)
690566.Sphch_0848+(mitochondrial)
690566.Sphch_1715(PF00593)ER
690566.Sphch_1042(PF00593)ER; (mitochondrial)
690566.Sphch_2713(PF00593)mitochondrial
690566.Sphch_3628(PF00593)ER
690566.Sphch_2932(PF00593)ER
690566.Sphch_3283(PF00593)(ER)
690566.Sphch_3280(PF00593)ER
690566.Sphch_3531(PF00593)mitochondrial
690566.Sphch_0477+(mitochondrial)
690566.Sphch_0509(PF00593)ER
690566.Sphch_2237(PF00593)ER
690566.Sphch_3837(PF14232) (PF14231)
690566.Sphch_3993(PF07110)(mitochondrial)
690566.Sphch_2697+(mitochondrial)
690566.Sphch_3500(PF07110)(mitochondrial)
690566.Sphch_3971+(PF00593)
690566.Sphch_2782(PF00593)(ER)
690566.Sphch_3134(PF00593)(mitochondrial)
690566.Sphch_3324(PF00593)(ER)
690566.Sphch_0904+(mitochondrial)
690566.Sphch_3855(PF14232) (PF14231)
690566.Sphch_0434(PF00593)(ER)
690566.Sphch_3809(PF07110)(mitochondrial)
690566.Sphch_3603+
690566.Sphch_0441(PF04209)
690566.Sphch_3197+
690566.Sphch_1585+
690566.Sphch_0696+
690566.Sphch_2741+
690566.Sphch_2705(PF13469)
690566.Sphch_1827+
690566.Sphch_0539+
690566.Sphch_0440+
690566.Sphch_0349+
690566.Sphch_1950+
690566.Sphch_1633(PF00593)
690566.Sphch_2200(PF00028)
690566.Sphch_2976(PF13469)
690566.Sphch_1789+
690566.Sphch_0827(PF00028)
690566.Sphch_3220+
690566.Sphch_3557(PF00593)
690566.Sphch_2956(PF00593)
690566.Sphch_3305(PF04209)
690566.Sphch_2497+
690566.Sphch_3549+
690566.Sphch_3541+
690566.Sphch_3840+
690566.Sphch_4002(PF00593)
690566.Sphch_0160(PF02958)
690566.Sphch_0340+
690566.Sphch_1184+
690566.Sphch_1502(PF02171)
690566.Sphch_2184(PF13469)
690566.Sphch_3074(PF00593)
690566.Sphch_4074(PF00593)
690566.Sphch_0006+
690566.Sphch_2197(PF13469)
690566.Sphch_3716(PF04209)
690566.Sphch_2302+
690566.Sphch_1871+
690566.Sphch_0932+
690566.Sphch_2606(PF13469)
690566.Sphch_1723+
690566.Sphch_3811+
690566.Sphch_1860(PF00593)
690566.Sphch_0409+
690566.Sphch_0135+
690566.Sphch_3626(PF13469)
690566.Sphch_3629(PF02958)
690566.Sphch_3610+
690566.Sphch_1458+
690566.Sphch_2014(PF02933)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.6 (16/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================