Metamenu

Effective results for Thermoanaerobacter wiegelii Rt8.B1 (eggnog40)

Summary

Number of putative secreted proteins: 86
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 86 proteins (1 high, 85 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
697303.Thewi_2626(PF05598) (PF01609)(plastid)
697303.Thewi_0660(PF05598) (PF01609)plastid
697303.Thewi_0085(PF01171)(mitochondrial)
697303.Thewi_1694(PF05598) (PF01609)(plastid)
697303.Thewi_1278(PF13936)(mitochondrial); (plastid)
697303.Thewi_1651(PF05598) (PF01609)(plastid)
697303.Thewi_0358(PF05598) (PF01609)(plastid)
697303.Thewi_2475(PF01171)(mitochondrial)
697303.Thewi_1967(PF05598) (PF01609)plastid
697303.Thewi_1281(PF02371)(mitochondrial)
697303.Thewi_1706(PF05598) (PF01609)(plastid)
697303.Thewi_2380(PF05598) (PF01609)(plastid)
697303.Thewi_1728(PF05598) (PF01609)(plastid)
697303.Thewi_0208(PF05598) (PF01609)(plastid)
697303.Thewi_1058(PF05598) (PF01609)(plastid)
697303.Thewi_1593(PF13936)(mitochondrial)
697303.Thewi_2124(PF13936)(mitochondrial)
697303.Thewi_1309(PF13936)(mitochondrial)
697303.Thewi_1656(PF13936)(mitochondrial)
697303.Thewi_2523(PF02811) (PF14791)
697303.Thewi_2689(PF05598) (PF01609)
697303.Thewi_2517(PF13936)(mitochondrial)
697303.Thewi_1328(PF13936)(mitochondrial)
697303.Thewi_0902(PF13936)(mitochondrial)
697303.Thewi_2532(PF02811) (PF14791)
697303.Thewi_2054(PF13936)(mitochondrial); not used
697303.Thewi_2052(PF13936)(mitochondrial)
697303.Thewi_1354(PF02811)plastid
697303.Thewi_1712(PF13936)(mitochondrial)
697303.Thewi_1027(PF05598) (PF01609)
697303.Thewi_0507(PF02971) (PF07837)
697303.Thewi_2621(PF02371)
697303.Thewi_1136(PF13401)
697303.Thewi_0315(PF05598)
697303.Thewi_2101(PF01609)
697303.Thewi_1209(PF09419)
697303.Thewi_2336(PF01171)
697303.Thewi_1477(PF01171)
697303.Thewi_0656(PF13401)
697303.Thewi_0650(PF02371)
697303.Thewi_1276(PF02371)
697303.Thewi_0782(PF02371)
697303.Thewi_2467(PF01880)
697303.Thewi_2661(PF02371)
697303.Thewi_1790(PF07085)
697303.Thewi_2208(PF01880)
697303.Thewi_2515(PF02906)
697303.Thewi_1083(PF13401)
697303.Thewi_1886(PF00643)
697303.Thewi_2609(PF02371)
697303.Thewi_1324(PF02811)
697303.Thewi_2192(PF05598)
697303.Thewi_0570(PF05598)
697303.Thewi_0573(PF13401)
697303.Thewi_0975(PF02811)
697303.Thewi_0974(PF07085)
697303.Thewi_0971(PF07085)
697303.Thewi_0973(PF02906)
697303.Thewi_1789(PF02811)
697303.Thewi_2053(PF01609)
697303.Thewi_2454(PF07085)
697303.Thewi_2455PF06888
697303.Thewi_1500(PF02371)
697303.Thewi_1985(PF02906)
697303.Thewi_1513(PF13401)
697303.Thewi_1974(PF02906)
697303.Thewi_0823(PF13401)
697303.Thewi_1567(PF02371)
697303.Thewi_0762(PF02371)
697303.Thewi_0764(PF13401)
697303.Thewi_0947(PF05598)
697303.Thewi_2399(PF13401)
697303.Thewi_1178(PF01609)
697303.Thewi_1715(PF13401)
697303.Thewi_2149(PF13401)
697303.Thewi_1146(PF02371)
697303.Thewi_2539(PF01609)
697303.Thewi_0457(PF05598)
697303.Thewi_2173(PF01609)
697303.Thewi_2598(PF02811)
697303.Thewi_1804(PF02811)
697303.Thewi_1734(PF02811)
697303.Thewi_1935(PF02811)
697303.Thewi_2614(PF13401)
697303.Thewi_1839(PF02371)
697303.Thewi_0980(PF02906)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================