Metamenu

Effective results for Prevotella oulorum F0390 (eggnog40)

Summary

Number of putative secreted proteins: 50
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 50 proteins (37 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
702438.HMPREF9431_02281(PF00328)ER
702438.HMPREF9431_01800(PF00328)(mitochondrial)
702438.HMPREF9431_01423(PF16313)ER
702438.HMPREF9431_02139(PF16317)ER
702438.HMPREF9431_00146(PF16313)ER; (ER)
702438.HMPREF9431_00145(PF16313)ER
702438.HMPREF9431_00482(PF01715)(plastid)
702438.HMPREF9431_01543PF00872
702438.HMPREF9431_01850PF00872
702438.HMPREF9431_01552PF00872
702438.HMPREF9431_01551PF00872not used
702438.HMPREF9431_00681PF00872not used
702438.HMPREF9431_00680PF00872
702438.HMPREF9431_01421PF00872
702438.HMPREF9431_00447PF00872
702438.HMPREF9431_00446PF00872
702438.HMPREF9431_00445PF00872not used
702438.HMPREF9431_00448PF00872not used
702438.HMPREF9431_01638PF00872
702438.HMPREF9431_01637PF00872not used
702438.HMPREF9431_01453PF00872
702438.HMPREF9431_01452PF00872not used
702438.HMPREF9431_00078PF00872
702438.HMPREF9431_00077PF00872not used
702438.HMPREF9431_01199PF00872
702438.HMPREF9431_01197(PF16314)
702438.HMPREF9431_01849PF00872
702438.HMPREF9431_00870PF00872
702438.HMPREF9431_00871PF00872not used
702438.HMPREF9431_00498PF00872
702438.HMPREF9431_02478PF00872
702438.HMPREF9431_02479PF00872
702438.HMPREF9431_02477PF00872
702438.HMPREF9431_00658(PF03630)
702438.HMPREF9431_00824(PF02689)
702438.HMPREF9431_01422PF00872
702438.HMPREF9431_01910PF00872not used
702438.HMPREF9431_01911PF00872
702438.HMPREF9431_01106(PF05693)
702438.HMPREF9431_00137PF00872not used
702438.HMPREF9431_00136PF00872
702438.HMPREF9431_00167PF00872
702438.HMPREF9431_00168PF00872
702438.HMPREF9431_02480PF00872
702438.HMPREF9431_02483PF00872
702438.HMPREF9431_00880PF00872not used
702438.HMPREF9431_01970(PF16011)
702438.HMPREF9431_00897(PF01715)
702438.HMPREF9431_00953PF00872
702438.HMPREF9431_00954PF00872not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================