Effective results for Achromobacter piechaudii ATCC 43553 (eggnog40)
Summary
Number of putative secreted proteins: 249
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 168 proteins (0 high, 168 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 742159.HMPREF0004_5218 | (PF00330) (PF00694) | ER | |||
| 742159.HMPREF0004_1301 | (PF13607) (PF13549) | ER | |||
| 742159.HMPREF0004_3505 | + | (mitochondrial) | |||
| 742159.HMPREF0004_0443 | (PF13458) | ER | |||
| 742159.HMPREF0004_0876 | + | ER | |||
| 742159.HMPREF0004_4802 | (PF13458) | ER | |||
| 742159.HMPREF0004_0123 | (PF13458) | ER | |||
| 742159.HMPREF0004_2672 | + | ER | |||
| 742159.HMPREF0004_5088 | + | ER | |||
| 742159.HMPREF0004_3125 | + | ER | |||
| 742159.HMPREF0004_1239 | (PF13458) | ER | |||
| 742159.HMPREF0004_0445 | (PF12399) | ER | |||
| 742159.HMPREF0004_2306 | (PF13458) | ER | |||
| 742159.HMPREF0004_1214 | (PF12399) | (mitochondrial) | |||
| 742159.HMPREF0004_1210 | (PF13458) | ER | |||
| 742159.HMPREF0004_2826 | (PF13458) | mitochondrial | |||
| 742159.HMPREF0004_0231 | + | ER | |||
| 742159.HMPREF0004_1664 | (PF01614) | mitochondrial; (mitochondrial) | |||
| 742159.HMPREF0004_2791 | + | mitochondrial | |||
| 742159.HMPREF0004_4979 | (PF13458) | (ER) | |||
| 742159.HMPREF0004_0316 | + | ER | |||
| 742159.HMPREF0004_1258 | (PF03737) | (mitochondrial); (plastid) | |||
| 742159.HMPREF0004_1599 | (PF13458) | ER | |||
| 742159.HMPREF0004_1597 | (PF12399) | ER | |||
| 742159.HMPREF0004_4030 | (PF03737) | mitochondrial; (mitochondrial) | |||
| 742159.HMPREF0004_3608 | (PF03417) | mitochondrial | |||
| 742159.HMPREF0004_4057 | (PF13458) | ER; (ER) | |||
| 742159.HMPREF0004_3627 | + | (mitochondrial) | |||
| 742159.HMPREF0004_1319 | + | ER | |||
| 742159.HMPREF0004_4316 | + | mitochondrial | |||
| 742159.HMPREF0004_5340 | + | ER | |||
| 742159.HMPREF0004_2019 | (PF13458) | ER | |||
| 742159.HMPREF0004_3686 | + | ER | |||
| 742159.HMPREF0004_0081 | (PF13458) | ER | |||
| 742159.HMPREF0004_0990 | + | ER; (ER) | |||
| 742159.HMPREF0004_3749 | (PF03737) | ER | |||
| 742159.HMPREF0004_3519 | + | ER | |||
| 742159.HMPREF0004_2604 | (PF11937) | mitochondrial; (mitochondrial) | |||
| 742159.HMPREF0004_0455 | (PF13458) | ER | |||
| 742159.HMPREF0004_3538 | (PF13458) | ER | |||
| 742159.HMPREF0004_3537 | (PF01614) | (ER); plastid | |||
| 742159.HMPREF0004_4819 | (PF01425) | (mitochondrial) | |||
| 742159.HMPREF0004_1390 | (PF13458) | ER | |||
| 742159.HMPREF0004_1829 | + | ER | |||
| 742159.HMPREF0004_4157 | (PF12399) | (mitochondrial) | |||
| 742159.HMPREF0004_4150 | (PF13458) | ER | |||
| 742159.HMPREF0004_0138 | (PF13458) | ER | |||
| 742159.HMPREF0004_3852 | + | ER | |||
| 742159.HMPREF0004_5405 | (PF00330) (PF00694) | plastid | |||
| 742159.HMPREF0004_4858 | (PF13458) | ER | |||
| 742159.HMPREF0004_5671 | (PF00330) (PF00694) | (mitochondrial) | |||
| 742159.HMPREF0004_0822 | + | ER | |||
| 742159.HMPREF0004_3334 | + | ER | |||
| 742159.HMPREF0004_4874 | (PF11937) | ER | |||
| 742159.HMPREF0004_5651 | (PF13458) | ER | |||
| 742159.HMPREF0004_1949 | (PF13458) | ER | |||
| 742159.HMPREF0004_4183 | + | mitochondrial; (mitochondrial) | |||
| 742159.HMPREF0004_4981 | + | ER | |||
| 742159.HMPREF0004_5391 | (PF13607) (PF13549) | (plastid) | |||
| 742159.HMPREF0004_4303 | + | ER | |||
| 742159.HMPREF0004_4658 | + | (mitochondrial) | |||
| 742159.HMPREF0004_1951 | (PF12399) | ER | |||
| 742159.HMPREF0004_1959 | (PF13458) | ER | |||
| 742159.HMPREF0004_2060 | + | ER | |||
| 742159.HMPREF0004_1124 | (PF13458) | ER | |||
| 742159.HMPREF0004_5396 | (PF13458) | ER; (ER) | |||
| 742159.HMPREF0004_2531 | + | ER | |||
| 742159.HMPREF0004_0638 | (PF13458) | ER | |||
| 742159.HMPREF0004_3562 | (PF13458) | ER | |||
| 742159.HMPREF0004_4160 | (PF13458) | ER | |||
| 742159.HMPREF0004_1482 | + | ER | |||
| 742159.HMPREF0004_4391 | (PF13607) (PF13549) | ||||
| 742159.HMPREF0004_4725 | + | (mitochondrial) | |||
| 742159.HMPREF0004_3381 | + | plastid | |||
| 742159.HMPREF0004_4556 | (PF13607) (PF13549) | ||||
| 742159.HMPREF0004_0833 | (PF01425) | (plastid) | |||
| 742159.HMPREF0004_2864 | (PF07364) (PF07171) | ||||
| 742159.HMPREF0004_4629 | (PF13607) (PF13549) | ||||
| 742159.HMPREF0004_5575 | (PF07364) (PF07171) | ||||
| 742159.HMPREF0004_1590 | (PF01614) | (mitochondrial) | |||
| 742159.HMPREF0004_0496 | (PF13458) | (plastid) | |||
| 742159.HMPREF0004_1290 | + | (mitochondrial) | |||
| 742159.HMPREF0004_0989 | + | plastid | |||
| 742159.HMPREF0004_3007 | (PF01614) | (ER) | |||
| 742159.HMPREF0004_0942 | (PF07364) (PF07171) | ||||
| 742159.HMPREF0004_3943 | (PF04775) (PF08840) | ||||
| 742159.HMPREF0004_2952 | + | plastid | |||
| 742159.HMPREF0004_3555 | (PF13458) | plastid | |||
| 742159.HMPREF0004_3231 | + | plastid | |||
| 742159.HMPREF0004_2911 | (PF13458) | (ER) | |||
| 742159.HMPREF0004_2914 | (PF12399) | plastid | |||
| 742159.HMPREF0004_0861 | (PF01425) | (mitochondrial) | |||
| 742159.HMPREF0004_0821 | (PF13458) | plastid | |||
| 742159.HMPREF0004_1889 | (PF03417) | (plastid) | |||
| 742159.HMPREF0004_3319 | + | (mitochondrial) | |||
| 742159.HMPREF0004_3783 | + | (plastid) | |||
| 742159.HMPREF0004_4409 | (PF00330) (PF00694) | ||||
| 742159.HMPREF0004_4664 | (PF02560) | (plastid) | |||
| 742159.HMPREF0004_3195 | (PF01614) | (plastid) | |||
| 742159.HMPREF0004_4502 | (PF01614) | (ER) | |||
| 742159.HMPREF0004_4943 | + | (mitochondrial) | |||
| 742159.HMPREF0004_0039 | (PF13607) (PF13549) | not used | |||
| 742159.HMPREF0004_1221 | (PF13458) | (plastid) | |||
| 742159.HMPREF0004_3916 | (PF04775) (PF08840) | ||||
| 742159.HMPREF0004_2512 | + | (ER) | |||
| 742159.HMPREF0004_3019 | + | (ER) | |||
| 742159.HMPREF0004_0404 | (PF12399) | (plastid) | |||
| 742159.HMPREF0004_5582 | (PF07364) (PF07171) | ||||
| 742159.HMPREF0004_2636 | (PF00330) | ||||
| 742159.HMPREF0004_2637 | (PF00694) | ||||
| 742159.HMPREF0004_5159 | + | ||||
| 742159.HMPREF0004_4631 | (PF01614) | ||||
| 742159.HMPREF0004_4496 | + | ||||
| 742159.HMPREF0004_3245 | (PF03737) | ||||
| 742159.HMPREF0004_4727 | + | ||||
| 742159.HMPREF0004_5454 | (PF12399) | ||||
| 742159.HMPREF0004_5456 | (PF01425) | ||||
| 742159.HMPREF0004_5293 | (PF03737) | ||||
| 742159.HMPREF0004_5479 | (PF12399) | ||||
| 742159.HMPREF0004_5476 | (PF13458) | ||||
| 742159.HMPREF0004_2415 | (PF01425) | ||||
| 742159.HMPREF0004_3107 | (PF01614) | ||||
| 742159.HMPREF0004_0106 | (PF01614) | ||||
| 742159.HMPREF0004_4451 | (PF00342) | ||||
| 742159.HMPREF0004_0335 | (PF01614) | ||||
| 742159.HMPREF0004_0024 | (PF01614) | ||||
| 742159.HMPREF0004_5643 | (PF01614) | ||||
| 742159.HMPREF0004_1563 | + | ||||
| 742159.HMPREF0004_2456 | + | ||||
| 742159.HMPREF0004_4140 | (PF01614) | ||||
| 742159.HMPREF0004_0141 | (PF12399) | ||||
| 742159.HMPREF0004_4413 | + | ||||
| 742159.HMPREF0004_0558 | (PF00342) | ||||
| 742159.HMPREF0004_4723 | + | ||||
| 742159.HMPREF0004_2304 | (PF01614) | ||||
| 742159.HMPREF0004_4622 | (PF02615) | ||||
| 742159.HMPREF0004_1666 | + | ||||
| 742159.HMPREF0004_2588 | + | ||||
| 742159.HMPREF0004_3186 | + | ||||
| 742159.HMPREF0004_5550 | (PF01614) | ||||
| 742159.HMPREF0004_5552 | (PF03737) | ||||
| 742159.HMPREF0004_4977 | (PF16155) | ||||
| 742159.HMPREF0004_0046 | + | ||||
| 742159.HMPREF0004_5498 | + | ||||
| 742159.HMPREF0004_2309 | (PF12399) | ||||
| 742159.HMPREF0004_2135 | (PF13549) | ||||
| 742159.HMPREF0004_4804 | (PF12399) | ||||
| 742159.HMPREF0004_3415 | (PF02615) | ||||
| 742159.HMPREF0004_0499 | (PF12399) | ||||
| 742159.HMPREF0004_0726 | (PF01614) | ||||
| 742159.HMPREF0004_5366 | (PF01425) | ||||
| 742159.HMPREF0004_2073 | + | ||||
| 742159.HMPREF0004_3292 | + | ||||
| 742159.HMPREF0004_1310 | (PF13458) | ||||
| 742159.HMPREF0004_2712 | + | ||||
| 742159.HMPREF0004_0502 | (PF01425) | ||||
| 742159.HMPREF0004_5004 | (PF01614) | ||||
| 742159.HMPREF0004_2059 | + | ||||
| 742159.HMPREF0004_5481 | (PF02615) | ||||
| 742159.HMPREF0004_1172 | (PF01425) | ||||
| 742159.HMPREF0004_2034 | (PF03417) | ||||
| 742159.HMPREF0004_5137 | (PF12399) | ||||
| 742159.HMPREF0004_0948 | (PF03737) | ||||
| 742159.HMPREF0004_0947 | (PF01425) | ||||
| 742159.HMPREF0004_5357 | (PF01614) | ||||
| 742159.HMPREF0004_3577 | + | ||||
| 742159.HMPREF0004_2564 | (PF13455) | ||||
| 742159.HMPREF0004_4192 | (PF02615) | ||||
| 742159.HMPREF0004_4998 | (PF01425) | ||||
| 742159.HMPREF0004_1801 | (PF01614) | ||||
| 742159.HMPREF0004_4860 | (PF12399) | ||||
| 742159.HMPREF0004_3552 | (PF12399) | ||||
| 742159.HMPREF0004_0451 | (PF12399) | ||||
| 742159.HMPREF0004_3536 | + | ||||
| 742159.HMPREF0004_2917 | (PF00694) | ||||
| 742159.HMPREF0004_2916 | (PF00330) | ||||
| 742159.HMPREF0004_3391 | (PF03737) | ||||
| 742159.HMPREF0004_4526 | (PF01614) | ||||
| 742159.HMPREF0004_4546 | + | ||||
| 742159.HMPREF0004_4540 | (PF01425) | ||||
| 742159.HMPREF0004_1392 | (PF12399) | ||||
| 742159.HMPREF0004_1530 | + | ||||
| 742159.HMPREF0004_1314 | (PF12399) | ||||
| 742159.HMPREF0004_3870 | + | ||||
| 742159.HMPREF0004_4732 | (PF13458) | ||||
| 742159.HMPREF0004_4735 | (PF12399) | ||||
| 742159.HMPREF0004_0860 | (PF01614) | ||||
| 742159.HMPREF0004_3853 | (PF01425) | ||||
| 742159.HMPREF0004_4452 | + | ||||
| 742159.HMPREF0004_5674 | (PF01614) | ||||
| 742159.HMPREF0004_1961 | (PF12399) | ||||
| 742159.HMPREF0004_3330 | + | ||||
| 742159.HMPREF0004_0178 | (PF01614) | ||||
| 742159.HMPREF0004_1089 | + | ||||
| 742159.HMPREF0004_1224 | (PF12399) | ||||
| 742159.HMPREF0004_3175 | + | ||||
| 742159.HMPREF0004_1209 | (PF01425) | ||||
| 742159.HMPREF0004_3781 | + | ||||
| 742159.HMPREF0004_2834 | (PF00165) | ||||
| 742159.HMPREF0004_4403 | (PF00330) | ||||
| 742159.HMPREF0004_3370 | (PF13875) | ||||
| 742159.HMPREF0004_3371 | + | ||||
| 742159.HMPREF0004_0160 | (PF01614) | ||||
| 742159.HMPREF0004_3429 | + | ||||
| 742159.HMPREF0004_5549 | (PF00342) | ||||
| 742159.HMPREF0004_4989 | (PF01614) | ||||
| 742159.HMPREF0004_4007 | (PF03737) | ||||
| 742159.HMPREF0004_0713 | + | ||||
| 742159.HMPREF0004_3898 | + | not used | |||
| 742159.HMPREF0004_0487 | (PF00330) | ||||
| 742159.HMPREF0004_0486 | (PF00694) | ||||
| 742159.HMPREF0004_5501 | (PF01614) | ||||
| 742159.HMPREF0004_2250 | (PF01614) | not used | |||
| 742159.HMPREF0004_3079 | (PF01614) | ||||
| 742159.HMPREF0004_3078 | (PF01425) | ||||
| 742159.HMPREF0004_3076 | (PF12399) | ||||
| 742159.HMPREF0004_3073 | (PF13458) | ||||
| 742159.HMPREF0004_3618 | (PF01425) | ||||
| 742159.HMPREF0004_0032 | (PF01614) | ||||
| 742159.HMPREF0004_0033 | (PF01614) | ||||
| 742159.HMPREF0004_1958 | (PF13458) | not used | |||
| 742159.HMPREF0004_3448 | + | ||||
| 742159.HMPREF0004_3917 | (PF08840) | not used | |||
| 742159.HMPREF0004_0935 | (PF02560) | ||||
| 742159.HMPREF0004_0431 | (PF01425) | ||||
| 742159.HMPREF0004_1127 | (PF12399) | ||||
| 742159.HMPREF0004_4060 | (PF12399) | ||||
| 742159.HMPREF0004_0265 | + | ||||
| 742159.HMPREF0004_4233 | + | ||||
| 742159.HMPREF0004_0006 | + | ||||
| 742159.HMPREF0004_2218 | + | ||||
| 742159.HMPREF0004_3035 | + | ||||
| 742159.HMPREF0004_5133 | (PF01425) | ||||
| 742159.HMPREF0004_5059 | + | ||||
| 742159.HMPREF0004_4887 | + | ||||
| 742159.HMPREF0004_2029 | + | ||||
| 742159.HMPREF0004_4305 | + | ||||
| 742159.HMPREF0004_1140 | (PF02615) | ||||
| 742159.HMPREF0004_5046 | + | ||||
| 742159.HMPREF0004_3755 | (PF01614) | ||||
| 742159.HMPREF0004_4766 | + | ||||
| 742159.HMPREF0004_4982 | (PF12399) | ||||
| 742159.HMPREF0004_5581 | (PF01425) | not used | |||
| 742159.HMPREF0004_5580 | (PF01425) | ||||
| 742159.HMPREF0004_2964 | + | ||||
| 742159.HMPREF0004_4167 | (PF07678) | ||||
| 742159.HMPREF0004_3733 | (PF01614) | ||||
| 742159.HMPREF0004_0424 | (PF02615) | ||||
| 742159.HMPREF0004_2445 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.2 (2/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.0 (8/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.2 (2/10 KEGG proteins)
Estimated copy number = 1.0 (8/8 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
