Metamenu

Effective results for Lactobacillus crispatus ST1 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 31 proteins (0 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
748671.LCRIS_01862(PF03577)mitochondrial
748671.LCRIS_01602(PF03083)(ER)
748671.LCRIS_01514(PF00165)(mitochondrial); not used
748671.LCRIS_00964(PF03051)
748671.LCRIS_00506(PF06026)
748671.LCRIS_01818(PF13936)
748671.LCRIS_00344(PF03051)
748671.LCRIS_01585(PF06026)
748671.LCRIS_01582(PF13204)
748671.LCRIS_00198(PF03051)
748671.LCRIS_01763(PF13936)
748671.LCRIS_01442(PF13936)
748671.LCRIS_00924(PF13936)
748671.LCRIS_00145(PF13936)
748671.LCRIS_01452(PF06838)
748671.LCRIS_00805(PF13151)
748671.LCRIS_00558(PF06100)
748671.LCRIS_00235(PF03577)
748671.LCRIS_00596(PF06026)
748671.LCRIS_00070(PF01501)
748671.LCRIS_01074(PF06838)
748671.LCRIS_01673(PF03577)
748671.LCRIS_01307(PF03577)
748671.LCRIS_00207(PF03051)
748671.LCRIS_00661(PF06100)
748671.LCRIS_00069(PF01501)
748671.LCRIS_00068(PF01501)
748671.LCRIS_01123(PF12588)
748671.LCRIS_01577(PF03083)
748671.LCRIS_01598(PF13936)
748671.LCRIS_01591(PF13204)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================