Metamenu

Effective results for gamma proteobacterium HdN1 (eggnog40)

Summary

Number of putative secreted proteins: 85
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 85 proteins (27 high, 58 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
83406.HDN1F_34820(PF02493)ER
83406.HDN1F_11880(PF13927)ER; (ER)
83406.HDN1F_18550(PF13431)mitochondrial
83406.HDN1F_31390PF08011 PF09820(mitochondrial)
83406.HDN1F_13900(PF02493)ER
83406.HDN1F_31930(PF13023)(ER)
83406.HDN1F_37270(PF02544)ER
83406.HDN1F_21760(PF13431)ER
83406.HDN1F_34590(PF09295)ER
83406.HDN1F_11750(PF10462)(ER)
83406.HDN1F_05410PF04184(mitochondrial)
83406.HDN1F_31990(PF03435)(mitochondrial)
83406.HDN1F_31970(PF13023)(mitochondrial)
83406.HDN1F_19320(PF05593)(plastid)
83406.HDN1F_20890(PF05593)(plastid)
83406.HDN1F_04630PF08011 PF09820
83406.HDN1F_19330PF08011 PF09820
83406.HDN1F_04620PF08011 PF09820
83406.HDN1F_21040(PF03435)(ER)
83406.HDN1F_20040PF08011 PF09820
83406.HDN1F_19310PF08011 PF09820
83406.HDN1F_36990PF08011 PF09820
83406.HDN1F_35580PF08011 PF09820
83406.HDN1F_15000PF08011 PF09820
83406.HDN1F_08700(PF01852)(ER)
83406.HDN1F_01940(PF05593)(plastid)
83406.HDN1F_27060PF08011 PF09820
83406.HDN1F_26460PF08011 PF09820
83406.HDN1F_19340(PF05593)(plastid)
83406.HDN1F_27020PF08011 PF09820
83406.HDN1F_26480PF08011 PF09820
83406.HDN1F_09450(PF13927)(mitochondrial)
83406.HDN1F_27030PF08011 PF09820
83406.HDN1F_02180(PF03435)plastid
83406.HDN1F_14980PF08011 PF09820
83406.HDN1F_36960PF08011 PF09820
83406.HDN1F_02830PF08011 PF09820
83406.HDN1F_36980(PF05593)(plastid)
83406.HDN1F_31360PF08011 PF09820
83406.HDN1F_06830(PF01073)(ER)
83406.HDN1F_36510PF08011 PF09820
83406.HDN1F_15380(PF02493)(ER)
83406.HDN1F_21860PF08011 PF09820
83406.HDN1F_31420PF08011 PF09820
83406.HDN1F_26550PF08011 PF09820
83406.HDN1F_36660(PF06314)
83406.HDN1F_30540(PF13927)
83406.HDN1F_15960(PF05593)
83406.HDN1F_36520(PF05593)
83406.HDN1F_27680(PF02493)
83406.HDN1F_08400(PF06250)
83406.HDN1F_11050(PF01073)
83406.HDN1F_27050(PF05593)
83406.HDN1F_20050(PF05593)
83406.HDN1F_32170PF06131
83406.HDN1F_17060(PF05593)
83406.HDN1F_14490(PF06314)
83406.HDN1F_02720(PF03435)
83406.HDN1F_18780(PF01852)
83406.HDN1F_33180(PF02873)
83406.HDN1F_29550(PF03435)
83406.HDN1F_05390(PF02873)
83406.HDN1F_02380(PF00368)
83406.HDN1F_08370(PF06250)
83406.HDN1F_01830PF06176
83406.HDN1F_22810(PF06314)
83406.HDN1F_08140(PF06314)
83406.HDN1F_09520(PF05185)
83406.HDN1F_27350(PF06250)
83406.HDN1F_07450(PF06250)
83406.HDN1F_32470(PF00368)
83406.HDN1F_14080(PF13875)
83406.HDN1F_24480(PF05593)
83406.HDN1F_32990(PF03435)
83406.HDN1F_18260(PF05593)
83406.HDN1F_03120(PF11815)
83406.HDN1F_21330(PF09752)
83406.HDN1F_26490(PF13023)
83406.HDN1F_02820PF00277
83406.HDN1F_36730(PF06250)
83406.HDN1F_22840(PF13023)
83406.HDN1F_21000(PF06250)
83406.HDN1F_15170(PF06250)
83406.HDN1F_34810PF06176
83406.HDN1F_02800(PF05593)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.625 (13/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================