Metamenu

Effective results for Helicobacter pylori J99 (eggnog40)

Summary

Number of putative secreted proteins: 128
- Predicted by T4SEpre: 114
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 38 proteins (0 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
85963.jhp0260+(PF01535)ER
85963.jhp0974+mitochondrial; (mitochondrial)
85963.jhp0947+ER
85963.jhp0949+ER
85963.jhp0490+ER
85963.jhp1195+ER
85963.jhp0820(PF01501)(ER)
85963.jhp1259+ER
85963.jhp1296+(PF01555)(ER)
85963.jhp0552+ER
85963.jhp0458+ER
85963.jhp0907+ER
85963.jhp0905+ER; (ER)
85963.jhp0045(PF01555)ER; (ER)
85963.jhp0074+ER
85963.jhp1413+ER
85963.jhp0091+ER
85963.jhp1233+(mitochondrial)
85963.jhp0797+ER
85963.jhp0241+ER
85963.jhp1112+ER
85963.jhp0658+ER
85963.jhp0342+ER; (ER)
85963.jhp0345+ER
85963.jhp0118+ER
85963.jhp0119+ER
85963.jhp1350+ER
85963.jhp0741(PF01755)(mitochondrial); mitochondrial
85963.jhp1347+ER
85963.jhp0169+ER
85963.jhp1166+mitochondrial
85963.jhp0174+(PF07510) (PF03235)
85963.jhp0579+ER
85963.jhp0151+ER
85963.jhp1284+(PF01555)
85963.jhp0955+(PF03235)
85963.jhp0588+(mitochondrial)
85963.jhp0111+(mitochondrial)
85963.jhp0462(PF07510) (PF03235)
85963.jhp0412+(ER)
85963.jhp0655+(mitochondrial)
85963.jhp1431+(PF07510)
85963.jhp1002(PF00852)(plastid)
85963.jhp0629(PF01555)(mitochondrial)
85963.jhp0572(PF07510) (PF03235)
85963.jhp0765(PF01755)(mitochondrial)
85963.jhp1041+
85963.jhp0802+
85963.jhp0704+
85963.jhp0706+
85963.jhp0127+
85963.jhp0232+
85963.jhp0940+
85963.jhp0495+
85963.jhp0837+
85963.jhp1280+
85963.jhp1444+
85963.jhp0130+
85963.jhp1061+
85963.jhp0957(PF07510)
85963.jhp0821+
85963.jhp1186+
85963.jhp0217+
85963.jhp1271(PF01555)
85963.jhp0929+
85963.jhp0928+
85963.jhp0925+
85963.jhp0927+
85963.jhp0027+
85963.jhp0933+
85963.jhp0931+
85963.jhp0936+
85963.jhp0934+
85963.jhp0596(PF00852)
85963.jhp0843+
85963.jhp0050+
85963.jhp0270+
85963.jhp0276+
85963.jhp0901+
85963.jhp0900+
85963.jhp0873(PF03235)
85963.jhp0872(PF07510)
85963.jhp0476+
85963.jhp0243+
85963.jhp0043(PF01555)
85963.jhp1407+
85963.jhp1311(PF01501)
85963.jhp0319+
85963.jhp0865+
85963.jhp1411(PF01555)
85963.jhp1417+
85963.jhp1302(PF07510)
85963.jhp1301(PF03235)
85963.jhp0090+
85963.jhp0322+
85963.jhp0896+
85963.jhp0892+
85963.jhp0899+
85963.jhp0415+
85963.jhp0248(PF01555)
85963.jhp1330+
85963.jhp0244(PF01555)
85963.jhp0085(PF01555)
85963.jhp0083+
85963.jhp0885+
85963.jhp1430(PF03235)
85963.jhp1177+
85963.jhp0816+
85963.jhp0162+
85963.jhp0560+
85963.jhp0563(PF01755)
85963.jhp0562(PF01755)
85963.jhp0193+
85963.jhp0194(PF01501)
85963.jhp0756(PF01555)
85963.jhp0755(PF02945)
85963.jhp0286+
85963.jhp1157+
85963.jhp1365+
85963.jhp1493(PF03981)
85963.jhp1494(PF03981)
85963.jhp0147(PF01501)
85963.jhp1031(PF01501)
85963.jhp1032(PF01501)
85963.jhp0813+
85963.jhp0606+
85963.jhp0155+
85963.jhp0156+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.5 (15/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================