Effective results for Capnocytophaga canimorsus Cc5 (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 34 proteins (12 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
860228.Ccan_16450				(PF09112) (PF09113)	ER
860228.Ccan_04040				(PF13287)	ER
860228.Ccan_14270				(PF02494)	ER
860228.Ccan_02260				(PF13583)	(mitochondrial)
860228.Ccan_13240				(PF02494)	ER
860228.Ccan_02270				(PF13583)	ER
860228.Ccan_03860				(PF13287)	ER
860228.Ccan_02280				(PF13583)	ER
860228.Ccan_07870				(PF13583)	ER
860228.Ccan_17430				(PF13402)	(mitochondrial)
860228.Ccan_08830				(PF13287)	ER; (ER)
860228.Ccan_22670				PF03400	(plastid)
860228.Ccan_11410				PF03400	(plastid)
860228.Ccan_12780				PF03400	(plastid)
860228.Ccan_22130				(PF05076)
860228.Ccan_21840				PF03400
860228.Ccan_10540				(PF13589)
860228.Ccan_04270				(PF13589)
860228.Ccan_11450				PF03400
860228.Ccan_23810				(PF05076)
860228.Ccan_21880				(PF05076)
860228.Ccan_08160				(PF13402)
860228.Ccan_12680				PF03400
860228.Ccan_15310				(PF14771)
860228.Ccan_08340				(PF13589)
860228.Ccan_11420				PF03400
860228.Ccan_16140				PF03400
860228.Ccan_12310				PF03400
860228.Ccan_16540				PF02893
860228.Ccan_13670				PF03400
860228.Ccan_08270				PF03400
860228.Ccan_10510				(PF13589)
860228.Ccan_04060				(PF05693)
860228.Ccan_00320				(PF13589)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================