Metamenu

Effective results for Arthrobacter arilaitensis Re117 (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 109 proteins (47 high, 62 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
861360.AARI_14600(PF17102) (PF11380)(mitochondrial)
861360.AARI_14570(PF17102) (PF11380)mitochondrial
861360.AARI_36250(PF00665)mitochondrial
861360.AARI_18330(PF11070)ER
861360.AARI_35970(PF01527)(mitochondrial)
861360.AARI_35290(PF00665)mitochondrial
861360.AARI_36050(PF00665)mitochondrial
861360.AARI_36220(PF00665)mitochondrial; (mitochondrial)
861360.AARI_35030(PF00665)mitochondrial
861360.AARI_35260(PF00665)mitochondrial
861360.AARI_35650(PF00665)(plastid)
861360.AARI_35010(PF00665)(mitochondrial)
861360.AARI_35530(PF00665)(mitochondrial)
861360.AARI_34870(PF00665)(plastid)
861360.AARI_36210(PF00665)(plastid)
861360.AARI_35440(PF02371)(plastid)
861360.AARI_35080(PF00665)(mitochondrial)
861360.AARI_34890(PF00665)(plastid)
861360.AARI_34380(PF00665)(mitochondrial)
861360.AARI_36140(PF02371)(plastid)
861360.AARI_34370(PF00665)(plastid)
861360.AARI_27100(PF05495)(mitochondrial)
861360.AARI_30840(PF07976)
861360.AARI_35490PF01610
861360.AARI_34640PF01610
861360.AARI_34790(PF00665)
861360.AARI_35660(PF01527)
861360.AARI_36080(PF00665)
861360.AARI_34410(PF00665)
861360.AARI_35500PF01610
861360.AARI_35690PF01610
861360.AARI_35040(PF01527)
861360.AARI_35220PF01610
861360.AARI_34650(PF01527)
861360.AARI_34610PF01610
861360.AARI_34580(PF02371)
861360.AARI_34720(PF02371)
861360.AARI_35180PF01610
861360.AARI_35450(PF02371)
861360.AARI_35050(PF01527)
861360.AARI_35980(PF00665)
861360.AARI_10640PF04886
861360.AARI_36180PF01610
861360.AARI_15460(PF06414)
861360.AARI_34460PF01610
861360.AARI_34910PF01610
861360.AARI_34600(PF02371)
861360.AARI_34590PF01610
861360.AARI_34730(PF00665)
861360.AARI_22240(PF00454)
861360.AARI_29960(PF06414)
861360.AARI_35950PF01610
861360.AARI_34850PF01610
861360.AARI_34700PF01610
861360.AARI_36240PF01610
861360.AARI_34450PF01610
861360.AARI_34840PF01610
861360.AARI_34930PF01610
861360.AARI_35150PF01610
861360.AARI_35400(PF01527)
861360.AARI_35390PF01610
861360.AARI_35460PF01610
861360.AARI_35370PF01610
861360.AARI_36000PF01610
861360.AARI_34430PF01610
861360.AARI_35140PF01610
861360.AARI_35410(PF00665)
861360.AARI_35700PF01610
861360.AARI_35380(PF02371)
861360.AARI_35360(PF02371)
861360.AARI_35960PF01610
861360.AARI_34420PF01610
861360.AARI_34950PF01610
861360.AARI_35600PF01610
861360.AARI_36150(PF02371)
861360.AARI_35280(PF01527)
861360.AARI_35820(PF01527)
861360.AARI_34980PF01610
861360.AARI_34740PF01610
861360.AARI_35340(PF00665)
861360.AARI_35610PF01610
861360.AARI_36230(PF02371)
861360.AARI_32240PF04886
861360.AARI_34400(PF01527)
861360.AARI_34570PF01610
861360.AARI_34970PF01610
861360.AARI_34990PF01610
861360.AARI_11920(PF07976)
861360.AARI_34750PF01610
861360.AARI_35110(PF01527)
861360.AARI_35330PF01610
861360.AARI_35620PF01610
861360.AARI_35240PF01610
861360.AARI_36040(PF01527)
861360.AARI_35800PF01610
861360.AARI_34690PF01610
861360.AARI_35740(PF00665)
861360.AARI_35630(PF02371)
861360.AARI_35930(PF01527)
861360.AARI_36100(PF01527)
861360.AARI_36070(PF01527)
861360.AARI_35810(PF00665)
861360.AARI_34680(PF00665)
861360.AARI_35640PF01610
861360.AARI_36200PF01610
861360.AARI_35790PF01610
861360.AARI_36060(PF02371)
861360.AARI_35860(PF01527)
861360.AARI_02880(PF00165)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================