Metamenu

Effective results for Veillonella atypica ACS-049-V-Sch6 (eggnog40)

Summary

Number of putative secreted proteins: 10
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 3 eukaryotic-like domains, contained in 10 proteins (0 high, 10 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
866776.HMPREF9321_0246(PF13518)(mitochondrial)
866776.HMPREF9321_1493(PF03083)ER; (ER)
866776.HMPREF9321_0755(PF13518)(mitochondrial)
866776.HMPREF9321_0449(PF01128)(mitochondrial)
866776.HMPREF9321_0375(PF13518)
866776.HMPREF9321_0746(PF01128)
866776.HMPREF9321_1631(PF13518)
866776.HMPREF9321_1445(PF03083)
866776.HMPREF9321_0001(PF13518)
866776.HMPREF9321_0775(PF01128)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================