Effective results for Cellulophaga lytica DSM 7489 (eggnog40)

Summary

Number of putative secreted proteins: 49
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 49 proteins (1 high, 48 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
867900.Celly_2755				(PF04536)	ER
867900.Celly_1314				(PF10988)	ER
867900.Celly_0681				(PF16313)	ER
867900.Celly_1980				(PF10988)	(mitochondrial); mitochondrial
867900.Celly_0698				(PF04536)	ER
867900.Celly_0875				(PF04536)	ER
867900.Celly_0807				(PF04784)	ER
867900.Celly_2714				(PF16313)	ER
867900.Celly_2501				(PF10988)	ER
867900.Celly_0814				(PF04784)	ER
867900.Celly_2450				(PF13905)	ER
867900.Celly_1440				(PF16313)	ER
867900.Celly_2529				(PF15902)	ER
867900.Celly_1475				(PF04536)	ER
867900.Celly_1656				(PF16313)	ER
867900.Celly_1864				(PF10988)	ER
867900.Celly_0517				(PF00431)	(ER)
867900.Celly_2456				(PF13905)	ER
867900.Celly_2453				(PF13905)	ER
867900.Celly_1347				(PF03321)	mitochondrial
867900.Celly_0185				(PF10988)	ER
867900.Celly_1168				(PF10988)	ER
867900.Celly_0318				(PF13905)	ER
867900.Celly_1541				(PF15902)	mitochondrial; (plastid)
867900.Celly_0449				(PF16757)	ER
867900.Celly_0440				(PF16757)	ER
867900.Celly_0442				(PF16757)	ER
867900.Celly_1400				(PF15902)	plastid
867900.Celly_0676				(PF01679)	ER; not used
867900.Celly_2911				(PF01679)	ER; not used
867900.Celly_3166				(PF01227)
867900.Celly_2302				(PF01227)
867900.Celly_3005				(PF01227)
867900.Celly_2683				(PF03959)
867900.Celly_0697				(PF04536)
867900.Celly_3120				PF10323
867900.Celly_2520				(PF07766)
867900.Celly_2466				(PF03321)
867900.Celly_1922				(PF16804)
867900.Celly_0726				(PF10013)	not used
867900.Celly_0729				(PF10504)
867900.Celly_2445				(PF13653)
867900.Celly_1934				(PF03321)
867900.Celly_0742				(PF13875)
867900.Celly_0369				(PF05686)
867900.Celly_3047				(PF08695)
867900.Celly_3216				(PF02171)
867900.Celly_2227				(PF01227)
867900.Celly_3140				(PF06241)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================