Effective results for Desulfurobacterium thermolithotrophum DSM 11699 (eggnog40)

Summary

Number of putative secreted proteins: 59
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 59 proteins (18 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
868864.Dester_0799				(PF01609)	mitochondrial
868864.Dester_1311				(PF01609)	mitochondrial
868864.Dester_0370				(PF01609)	mitochondrial
868864.Dester_1141				PF13565	(mitochondrial)
868864.Dester_0360				PF13565	(mitochondrial)
868864.Dester_0686				PF13565	(mitochondrial)
868864.Dester_1378				(PF02516)	ER
868864.Dester_0517				PF13565	(mitochondrial)
868864.Dester_0422				(PF01609)	mitochondrial
868864.Dester_0509				(PF01609)	mitochondrial
868864.Dester_0503				(PF01609)	mitochondrial
868864.Dester_0550				PF13565	(mitochondrial)
868864.Dester_0233				PF13565	(mitochondrial)
868864.Dester_1002				(PF01609)	mitochondrial
868864.Dester_0751				(PF01609)	mitochondrial
868864.Dester_0753				PF13565	(mitochondrial)
868864.Dester_0347				(PF01609)	mitochondrial
868864.Dester_1128				PF13565	(mitochondrial)
868864.Dester_1256				PF13565	(mitochondrial)
868864.Dester_0278				(PF01609)	mitochondrial
868864.Dester_1133				PF13565	(mitochondrial)
868864.Dester_0671				(PF04423)	mitochondrial
868864.Dester_0461				(PF01609)	mitochondrial
868864.Dester_0852				(PF01609)	mitochondrial
868864.Dester_1076				(PF01609)	mitochondrial
868864.Dester_0618				PF13565	(mitochondrial)
868864.Dester_0324				(PF01609)	mitochondrial
868864.Dester_0923				(PF01609)	mitochondrial
868864.Dester_0925				PF13565	(mitochondrial)
868864.Dester_0492				PF13565	(mitochondrial)
868864.Dester_0498				(PF01609)	mitochondrial
868864.Dester_1540				(PF01609)	mitochondrial
868864.Dester_0421				(PF01609)	ER
868864.Dester_0946				PF04252	(mitochondrial)
868864.Dester_0783				(PF02371)
868864.Dester_0681				PF13565
868864.Dester_1485				(PF02371)
868864.Dester_1340				(PF02371)
868864.Dester_0187				(PF02371)
868864.Dester_0508				(PF02371)
868864.Dester_1174				(PF02371)
868864.Dester_1348				(PF01142)
868864.Dester_1430				(PF02371)
868864.Dester_0341				(PF02371)
868864.Dester_1255				(PF01880)
868864.Dester_0272				(PF02371)
868864.Dester_1135				(PF16114)
868864.Dester_1276				(PF02371)
868864.Dester_0053				PF01423
868864.Dester_0052				(PF01609)
868864.Dester_0596				(PF02371)
868864.Dester_0591				(PF01880)
868864.Dester_0115				(PF01142)
868864.Dester_0935				(PF02371)
868864.Dester_0856				PF13565
868864.Dester_1183				(PF02371)
868864.Dester_0322				(PF02371)
868864.Dester_1068				PF04670
868864.Dester_0831				(PF02371)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================