Effective results for Streptococcus criceti HS-6 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 57 proteins (1 high, 56 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
873449.STRCR_0756				(PF00359)	(mitochondrial)
873449.STRCR_0637				(PF05257)	ER
873449.STRCR_1514				(PF05496) (PF16193) (PF12002)
873449.STRCR_0791				(PF08002)	(mitochondrial); mitochondrial
873449.STRCR_0671				(PF08002)	mitochondrial
873449.STRCR_0699				(PF05257)	ER
873449.STRCR_1482				(PF05496) (PF16193) (PF12002)
873449.STRCR_0440				(PF05257)	ER
873449.STRCR_0459				(PF13787)	ER
873449.STRCR_0236				(PF05257)	ER
873449.STRCR_1040				(PF13787)	ER
873449.STRCR_0286				(PF16193) (PF12002)
873449.STRCR_0250				(PF13551) (PF13592)
873449.STRCR_0786				(PF13551) (PF13592)
873449.STRCR_2250				(PF13551) (PF13592)
873449.STRCR_0874				(PF13551) (PF13592)
873449.STRCR_2328				PF02916	(ER)
873449.STRCR_0213				(PF13551) (PF13592)
873449.STRCR_0198				(PF00359)	(ER)
873449.STRCR_0738				(PF05496) (PF16193)
873449.STRCR_0885				(PF13551) (PF13592)
873449.STRCR_1144				(PF13551) (PF13592)
873449.STRCR_0152				(PF00359)	(mitochondrial)
873449.STRCR_1366				(PF00359)
873449.STRCR_0374				(PF13936)
873449.STRCR_0565				(PF13592)
873449.STRCR_1177				(PF05257)
873449.STRCR_1172				(PF13936)
873449.STRCR_1746				(PF00359)
873449.STRCR_1745				(PF00359)
873449.STRCR_0601				(PF13936)
873449.STRCR_0823				(PF00359)
873449.STRCR_0824				(PF00359)
873449.STRCR_0827				(PF00834)
873449.STRCR_1349				(PF13936)
873449.STRCR_0359				(PF12862)
873449.STRCR_2298				(PF13936)
873449.STRCR_0753				(PF00359)
873449.STRCR_2062				(PF13936)
873449.STRCR_2263				(PF00359)
873449.STRCR_0146				(PF13936)
873449.STRCR_2240				(PF00359)
873449.STRCR_0001				(PF13936)
873449.STRCR_0879				(PF13936)
873449.STRCR_0877				(PF13551)
873449.STRCR_0121				(PF05495)
873449.STRCR_0685				(PF00834)
873449.STRCR_1100				(PF00359)
873449.STRCR_0672				(PF08002)
873449.STRCR_2239				(PF00359)
873449.STRCR_0509				(PF05496)
873449.STRCR_0193				(PF00359)
873449.STRCR_1266				(PF00834)
873449.STRCR_1867				(PF00359)
873449.STRCR_1868				(PF00359)
873449.STRCR_0092				(PF13936)
873449.STRCR_1155				(PF13936)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================