Metamenu

Effective results for Pseudoramibacter alactolyticus ATCC 23263 (eggnog40)

Summary

Number of putative secreted proteins: 70
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 70 proteins (4 high, 66 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
887929.HMP0721_0890(PF02361)ER
887929.HMP0721_1825(PF00209)(ER)
887929.HMP0721_1357(PF02361)ER
887929.HMP0721_0779(PF00209)ER
887929.HMP0721_0180(PF10662)mitochondrial
887929.HMP0721_0968(PF00370) (PF02782)(plastid)
887929.HMP0721_1614(PF02361)ER
887929.HMP0721_0988(PF00370) (PF02782)(mitochondrial)
887929.HMP0721_0352(PF00370) (PF02782)(mitochondrial)
887929.HMP0721_1663(PF05738)(mitochondrial); (ER)
887929.HMP0721_1662(PF05738)ER
887929.HMP0721_1664(PF07479) (PF01210)(ER)
887929.HMP0721_2318(PF02361)ER
887929.HMP0721_2311(PF02361)ER
887929.HMP0721_0074(PF02361)(ER); ER
887929.HMP0721_1699(PF02361)ER
887929.HMP0721_0676(PF10662)(mitochondrial)
887929.HMP0721_2412(PF05738)ER
887929.HMP0721_0591(PF05738)ER
887929.HMP0721_0550(PF01746)(ER)
887929.HMP0721_0955(PF02788) (PF00016)
887929.HMP0721_0959(PF00370) (PF02782)
887929.HMP0721_0969(PF00370) (PF02782)
887929.HMP0721_0986(PF00370) (PF02782)
887929.HMP0721_0971(PF00370) (PF02782)
887929.HMP0721_1805(PF00370) (PF02782)
887929.HMP0721_1800(PF00370) (PF02782)
887929.HMP0721_0323(PF00370) (PF02782)
887929.HMP0721_0322(PF07479) (PF01210)
887929.HMP0721_2045(PF00016) (PF02788)
887929.HMP0721_2207(PF02788) (PF00016)
887929.HMP0721_2204(PF00370) (PF02782)
887929.HMP0721_2209(PF00370) (PF02782)
887929.HMP0721_1138(PF14022)(mitochondrial)
887929.HMP0721_0782(PF00209)(ER)
887929.HMP0721_2300(PF00370) (PF02782)
887929.HMP0721_1682(PF07479) (PF01210)
887929.HMP0721_1687(PF00370) (PF02782)
887929.HMP0721_1691(PF00370) (PF02782)
887929.HMP0721_0474(PF01746)(ER)
887929.HMP0721_2408(PF05738)(plastid)
887929.HMP0721_1429(PF02361)(plastid)
887929.HMP0721_0442(PF00121)(mitochondrial)
887929.HMP0721_1090(PF00370) (PF02782)
887929.HMP0721_2012(PF00370) (PF02782)
887929.HMP0721_2377(PF14512)
887929.HMP0721_0169(PF02361)
887929.HMP0721_0948(PF00121)
887929.HMP0721_2495(PF00344)not used
887929.HMP0721_0956PF07892
887929.HMP0721_1826(PF00209)
887929.HMP0721_0982PF07892
887929.HMP0721_0974(PF00121)
887929.HMP0721_2210PF07892
887929.HMP0721_0332(PF00163)
887929.HMP0721_1483(PF00163)
887929.HMP0721_1798(PF02782)
887929.HMP0721_1137(PF14022)
887929.HMP0721_1650(PF01964)
887929.HMP0721_1651(PF01964)
887929.HMP0721_1491(PF00344)
887929.HMP0721_0780(PF00209)
887929.HMP0721_2307(PF14512)
887929.HMP0721_1478(PF02361)
887929.HMP0721_0816(PF01991)
887929.HMP0721_0119(PF12437)
887929.HMP0721_0120(PF12437)
887929.HMP0721_2296PF07892
887929.HMP0721_2280(PF12437)
887929.HMP0721_1432(PF01964)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================