Effective results for Centipeda periodontii DSM 2778 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 32 proteins (3 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
888060.HMPREF9081_0497				(PF01871)	ER; (ER)
888060.HMPREF9081_0752				(PF07927)	(mitochondrial)
888060.HMPREF9081_2208				(PF07927)	(mitochondrial)
888060.HMPREF9081_1543				(PF07927)	(mitochondrial)
888060.HMPREF9081_1061				(PF14566)	ER
888060.HMPREF9081_0474				(PF09370)	(mitochondrial)
888060.HMPREF9081_0476				(PF09370)	ER
888060.HMPREF9081_1622				(PF13541) (PF01078)
888060.HMPREF9081_1753				(PF13541) (PF01078)
888060.HMPREF9081_1791				PF00349 PF03727
888060.HMPREF9081_0876				PF00349 PF03727
888060.HMPREF9081_0462				(PF14021)	(mitochondrial)
888060.HMPREF9081_1683				(PF13541) (PF01078)
888060.HMPREF9081_1770				(PF13541)
888060.HMPREF9081_0698				(PF09811)
888060.HMPREF9081_1618				(PF13844)
888060.HMPREF9081_1987				(PF01078)
888060.HMPREF9081_0962				(PF07927)
888060.HMPREF9081_2183				(PF07927)	not used
888060.HMPREF9081_1565				(PF12646)
888060.HMPREF9081_0244				(PF07927)
888060.HMPREF9081_2050				(PF01871)
888060.HMPREF9081_0148				(PF13844)
888060.HMPREF9081_0147				(PF13844)
888060.HMPREF9081_0337				PF11443
888060.HMPREF9081_1599				(PF12821)
888060.HMPREF9081_0443				(PF14021)
888060.HMPREF9081_1464				(PF02475)
888060.HMPREF9081_0999				(PF12821)
888060.HMPREF9081_0998				(PF12821)
888060.HMPREF9081_1013				(PF13844)
888060.HMPREF9081_0515				(PF13844)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================