Effective results for Peptoniphilus harei ACS-146-V-Sch2b (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 23 proteins (1 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
908338.HMPREF9286_0390				(PF01813)	mitochondrial; (mitochondrial)
908338.HMPREF9286_0520				(PF01813)	mitochondrial; (mitochondrial)
908338.HMPREF9286_1321				(PF11070)	ER
908338.HMPREF9286_0015				(PF01121)	(ER)
908338.HMPREF9286_0556				(PF07837) (PF02971)
908338.HMPREF9286_0702				(PF16199)
908338.HMPREF9286_0386				(PF12646)
908338.HMPREF9286_0393				(PF01990)
908338.HMPREF9286_0392				(PF16886)
908338.HMPREF9286_0395				(PF01991)
908338.HMPREF9286_0394				(PF01992)
908338.HMPREF9286_0397				(PF01496)
908338.HMPREF9286_0652				(PF16199)
908338.HMPREF9286_0016				(PF01121)	not used
908338.HMPREF9286_1087				PF07847
908338.HMPREF9286_0770				(PF16199)
908338.HMPREF9286_1203				(PF06100)
908338.HMPREF9286_1110				(PF00847)
908338.HMPREF9286_0522				(PF16886)
908338.HMPREF9286_0526				(PF01496)
908338.HMPREF9286_0527				(PF01992)
908338.HMPREF9286_0524				(PF01990)
908338.HMPREF9286_0987				(PF06100)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================