Metamenu

Effective results for Weissella cibaria KACC 11862 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 29 proteins (1 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
911104.WcibK1_010100003954(PF00413)ER
911104.WcibK1_010100005064(PF03306)ER; (ER)
911104.WcibK1_010100007400(PF00413)ER
911104.WcibK1_010100007520(PF00413)ER
911104.WcibK1_010100001464(PF12949)mitochondrial
911104.WcibK1_010100000750PF04103ER
911104.WcibK1_010100009658(PF17101) (PF11380)
911104.WcibK1_010100004299(PF17101) (PF11380)
911104.WcibK1_010100001124(PF02787)(ER)
911104.WcibK1_010100005368(PF01988)(ER)
911104.WcibK1_010100009087(PF06026)
911104.WcibK1_010100000905(PF05014)
911104.WcibK1_010100010033(PF06026)
911104.WcibK1_010100002891(PF05014)
911104.WcibK1_010100001764(PF01988)
911104.WcibK1_010100001769(PF01988)
911104.WcibK1_010100003427(PF00413)
911104.WcibK1_010100007582(PF06421)
911104.WcibK1_010100000835(PF03306)
911104.WcibK1_010100001129(PF00988)
911104.WcibK1_010100009563(PF05495)
911104.WcibK1_010100009172(PF02787)
911104.WcibK1_010100009177(PF00988)
911104.WcibK1_010100006861(PF00988)
911104.WcibK1_010100007862(PF01988)
911104.WcibK1_010100009237(PF06421)
911104.WcibK1_010100006856(PF02787)
911104.WcibK1_010100006325(PF05014)
911104.WcibK1_010100002616(PF06026)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================