Effective results for Anaerolinea thermophila UNI-1 (eggnog40)
Summary
Number of putative secreted proteins: 115
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 115 proteins (22 high, 93 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 926569.ANT_09150 | PF13492 (PF13185) | ER | |||
| 926569.ANT_03450 | PF13492 (PF13185) | ER | |||
| 926569.ANT_00770 | PF07677 (PF07678) | ER | |||
| 926569.ANT_06600 | PF13492 (PF13185) | ER | |||
| 926569.ANT_14130 | PF16158 | ER | |||
| 926569.ANT_03190 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_27990 | PF13492 | mitochondrial | |||
| 926569.ANT_26860 | PF13886 | ER | |||
| 926569.ANT_00060 | (PF13185) | ER | |||
| 926569.ANT_26070 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_09820 | (PF13185) | (ER); (mitochondrial) | |||
| 926569.ANT_05640 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_22280 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_00940 | PF16158 | ER | |||
| 926569.ANT_13630 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_26600 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_13620 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_09170 | (PF13185) | ER | |||
| 926569.ANT_23040 | PF16158 | ER | |||
| 926569.ANT_13920 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_06250 | (PF01930) | ER | |||
| 926569.ANT_13930 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_08580 | (PF13185) | ER | |||
| 926569.ANT_09160 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_20120 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_17170 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_07570 | PF16158 | ER | |||
| 926569.ANT_15800 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_19210 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_11250 | PF13492 | ER | |||
| 926569.ANT_01740 | (PF16889) | ER | |||
| 926569.ANT_13090 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_28100 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_04130 | (PF13185) | ER | |||
| 926569.ANT_29990 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_28340 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_22190 | PF16158 | ER | |||
| 926569.ANT_11230 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_11160 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_10360 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_11830 | (PF13185) | (mitochondrial) | |||
| 926569.ANT_07940 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_01530 | PF16158 | ER | |||
| 926569.ANT_18130 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_13520 | (PF01555) | (mitochondrial) | |||
| 926569.ANT_27320 | (PF01609) | (mitochondrial) | |||
| 926569.ANT_27310 | (PF02171) | (mitochondrial); mitochondrial | |||
| 926569.ANT_08900 | PF13492 | ER; (ER) | |||
| 926569.ANT_15080 | PF16158 | ER | |||
| 926569.ANT_27450 | PF13492 (PF13185) | ||||
| 926569.ANT_29040 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_31570 | (PF13185) | (mitochondrial) | |||
| 926569.ANT_01020 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_31210 | PF13492 (PF13185) | ||||
| 926569.ANT_06680 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_31520 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_23290 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_30310 | PF13492 | (ER) | |||
| 926569.ANT_12290 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_24720 | PF13492 (PF13185) | ||||
| 926569.ANT_11810 | (PF13185) | (mitochondrial) | |||
| 926569.ANT_25860 | PF03465 | (ER) | |||
| 926569.ANT_26520 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_22680 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_02280 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_03620 | (PF13185) | (mitochondrial) | |||
| 926569.ANT_16450 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_11210 | (PF02971) (PF07837) | ||||
| 926569.ANT_15660 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_03830 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_13540 | (PF03050) | (mitochondrial) | |||
| 926569.ANT_13300 | (PF13185) | ||||
| 926569.ANT_12240 | (PF01930) | ||||
| 926569.ANT_10850 | (PF13185) | ||||
| 926569.ANT_23160 | (PF04423) | ||||
| 926569.ANT_02070 | (PF13185) | ||||
| 926569.ANT_19600 | (PF01555) | ||||
| 926569.ANT_09830 | (PF13185) | ||||
| 926569.ANT_24620 | (PF16889) | ||||
| 926569.ANT_12420 | (PF08271) | not used | |||
| 926569.ANT_31200 | (PF13185) | ||||
| 926569.ANT_00030 | (PF01555) | ||||
| 926569.ANT_15770 | (PF13185) | ||||
| 926569.ANT_23460 | (PF00091) | ||||
| 926569.ANT_25700 | (PF13185) | ||||
| 926569.ANT_30330 | (PF14938) | ||||
| 926569.ANT_08590 | (PF01609) | ||||
| 926569.ANT_06880 | (PF13185) | ||||
| 926569.ANT_28870 | (PF01555) | ||||
| 926569.ANT_09350 | (PF01609) | ||||
| 926569.ANT_17380 | (PF00091) | ||||
| 926569.ANT_28390 | (PF01930) | ||||
| 926569.ANT_03040 | (PF01555) | ||||
| 926569.ANT_01570 | (PF01609) | ||||
| 926569.ANT_28000 | (PF13185) | ||||
| 926569.ANT_17370 | (PF00091) | ||||
| 926569.ANT_16280 | (PF13185) | ||||
| 926569.ANT_04470 | (PF16485) | ||||
| 926569.ANT_26190 | (PF03016) | ||||
| 926569.ANT_09250 | PF13492 | ||||
| 926569.ANT_11800 | (PF13185) | ||||
| 926569.ANT_30200 | (PF13415) | ||||
| 926569.ANT_04840 | (PF01555) | ||||
| 926569.ANT_15690 | PF16158 | ||||
| 926569.ANT_27800 | (PF01609) | ||||
| 926569.ANT_27330 | (PF01555) | ||||
| 926569.ANT_00430 | (PF01555) | ||||
| 926569.ANT_11820 | (PF13185) | ||||
| 926569.ANT_12480 | (PF13185) | ||||
| 926569.ANT_13850 | (PF14938) | ||||
| 926569.ANT_11780 | (PF13185) | ||||
| 926569.ANT_07140 | (PF01609) | ||||
| 926569.ANT_23810 | (PF01555) | ||||
| 926569.ANT_01290 | (PF01555) | ||||
| 926569.ANT_21230 | (PF04098) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
