Metamenu

Effective results for Actinomyces sp. oral taxon 175 str. F0384 (eggnog40)

Summary

Number of putative secreted proteins: 14
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 14 proteins (1 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
944560.HMPREF9058_1479(PF04886)ER
944560.HMPREF9058_0346(PF09359)plastid
944560.HMPREF9058_0050(PF05063)
944560.HMPREF9058_2171(PF04326)
944560.HMPREF9058_1959(PF04326)
944560.HMPREF9058_2408(PF08354)
944560.HMPREF9058_1647(PF12862)
944560.HMPREF9058_0082(PF04326)
944560.HMPREF9058_0252(PF04326)
944560.HMPREF9058_1974(PF05063)
944560.HMPREF9058_0348(PF09359)
944560.HMPREF9058_1174PF00910
944560.HMPREF9058_2137(PF09683)
944560.HMPREF9058_1199(PF14885)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================