Metamenu

Effective results for Caldalkalibacillus thermarum TA2.A1 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 21 proteins (1 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
986075.CathTA2_0187(PF13386)ER
986075.CathTA2_1506(PF06695)ER
986075.CathTA2_0117PF10176ER
986075.CathTA2_1352(PF01931)(mitochondrial)
986075.CathTA2_0833(PF00265)(plastid)
986075.CathTA2_0249(PF07653)(mitochondrial)
986075.CathTA2_0044(PF13386)(mitochondrial)
986075.CathTA2_0209(PF14330)
986075.CathTA2_2442(PF08761)
986075.CathTA2_2203(PF09419)
986075.CathTA2_0461(PF13386)not used
986075.CathTA2_1993(PF01946)
986075.CathTA2_0916(PF01931)
986075.CathTA2_2181(PF02679)
986075.CathTA2_2995(PF06695)
986075.CathTA2_1233(PF08761)
986075.CathTA2_3034(PF01946)
986075.CathTA2_0131(PF00265)
986075.CathTA2_2830(PF00265)
986075.CathTA2_0573(PF05495)
986075.CathTA2_0362(PF02679)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================