Metamenu

Effective results for Polymorphum gilvum SL003B-26A1 (eggnog40)

Summary

Number of putative secreted proteins: 117
- Predicted by T4SEpre: 66
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 61 proteins (0 high, 61 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
991905.SL003B_4263(PF04143)(ER)
991905.SL003B_2589(PF00665)(mitochondrial)
991905.SL003B_1599(PF04143)ER
991905.SL003B_0525(PF00665)(mitochondrial)
991905.SL003B_4268(PF05050)mitochondrial
991905.SL003B_0573(PF02239)ER
991905.SL003B_0398+mitochondrial
991905.SL003B_0779+ER
991905.SL003B_0177+ER
991905.SL003B_4077(PF00665)mitochondrial; plastid
991905.SL003B_3395+ER
991905.SL003B_2600+ER
991905.SL003B_1148+ER
991905.SL003B_4040+(mitochondrial)
991905.SL003B_3342+ER
991905.SL003B_0378+ER
991905.SL003B_0576(PF02239)ER
991905.SL003B_3718+(mitochondrial)
991905.SL003B_1600(PF04143)ER
991905.SL003B_0568(PF02239)ER
991905.SL003B_3720+(mitochondrial)
991905.SL003B_0742+ER
991905.SL003B_4026(PF08022)ER
991905.SL003B_2529+mitochondrial; (mitochondrial)
991905.SL003B_2276(PF00665)(mitochondrial)
991905.SL003B_0928+ER
991905.SL003B_1991(PF04800)mitochondrial
991905.SL003B_2880+(mitochondrial)
991905.SL003B_0017(PF01847)(ER)
991905.SL003B_3453+mitochondrial; (mitochondrial)
991905.SL003B_3793(PF02239)(ER)
991905.SL003B_2688(PF04143)(ER)
991905.SL003B_1873+ER
991905.SL003B_2690(PF04143)ER
991905.SL003B_0734+ER
991905.SL003B_0212+(plastid)
991905.SL003B_2588(PF13565) (PF00665)
991905.SL003B_0704(PF13565) (PF00665)
991905.SL003B_2565(PF08022)(ER)
991905.SL003B_4216+(mitochondrial)
991905.SL003B_0390+(mitochondrial)
991905.SL003B_3821(PF14330)(mitochondrial)
991905.SL003B_1765+(ER)
991905.SL003B_2274(PF13565) (PF00665)
991905.SL003B_2640(PF13565) (PF00665)
991905.SL003B_3848(PF13565) (PF00665)
991905.SL003B_3052+(PF11563)
991905.SL003B_0672(PF13565) (PF00665)
991905.SL003B_0813(PF13565) (PF00665)
991905.SL003B_0684+(mitochondrial)
991905.SL003B_0698+(mitochondrial)
991905.SL003B_0864+(mitochondrial)
991905.SL003B_3180(PF00665)
991905.SL003B_2587(PF00665)
991905.SL003B_2761(PF11563)
991905.SL003B_2760(PF05050)
991905.SL003B_0715(PF00665)
991905.SL003B_2869+
991905.SL003B_1056+
991905.SL003B_1057(PF00665)
991905.SL003B_4086+
991905.SL003B_0706(PF00665)
991905.SL003B_4065+
991905.SL003B_2387+
991905.SL003B_0392+
991905.SL003B_0601+
991905.SL003B_2049+
991905.SL003B_1960(PF01812)
991905.SL003B_2838(PF00665)
991905.SL003B_1702+
991905.SL003B_3952+
991905.SL003B_2847(PF05050)
991905.SL003B_2532+
991905.SL003B_4294+
991905.SL003B_2192+
991905.SL003B_2064+
991905.SL003B_1369+
991905.SL003B_4075(PF00665)
991905.SL003B_4074(PF00665)
991905.SL003B_0585(PF13875)
991905.SL003B_0639+
991905.SL003B_3219+
991905.SL003B_2071(PF05050)
991905.SL003B_3621+
991905.SL003B_2860(PF09130)
991905.SL003B_0641(PF00665)
991905.SL003B_4326(PF05050)
991905.SL003B_0912(PF01812)
991905.SL003B_1661(PF00665)
991905.SL003B_1830+
991905.SL003B_4136(PF00665)
991905.SL003B_0656(PF04800)
991905.SL003B_3051(PF11563)
991905.SL003B_4009(PF00665)
991905.SL003B_1233+
991905.SL003B_2256+
991905.SL003B_1982+
991905.SL003B_0487+
991905.SL003B_3510+
991905.SL003B_1529+
991905.SL003B_0325(PF11563)
991905.SL003B_3676+
991905.SL003B_0814(PF05050)
991905.SL003B_4141(PF01812)
991905.SL003B_0264(PF00665)
991905.SL003B_3062+
991905.SL003B_3333(PF00102)
991905.SL003B_4170(PF04143)
991905.SL003B_2370+
991905.SL003B_2439(PF00665)
991905.SL003B_1497(PF01442)
991905.SL003B_0654+
991905.SL003B_3642(PF11563)
991905.SL003B_0736(PF09130)
991905.SL003B_1488(PF11563)
991905.SL003B_2574+
991905.SL003B_4261+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.3 (13/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================