Effective results for Peptoniphilus grossensis ph5 (refseq)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 30 proteins (3 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
WP_019124864.1				(PF01813)	mitochondrial
WP_019125650.1				(PF02361)	ER
WP_019124688.1				PF02037	ER
WP_000567178.1				(PF02361)	(ER); ER
WP_002836640.1				(PF02361)	ER
WP_019124183.1				(PF01496)	(mitochondrial)
WP_019125420.1				(PF11070)	ER
WP_000687642.1				(PF02361)	ER
WP_019124898.1				(PF07837) (PF02971)
WP_019124238.1				(PF02361)	(ER)
WP_019125079.1				(PF02361)
WP_019124186.1				(PF01992)
WP_019124364.1				(PF06100)
WP_019125107.1				(PF02361)
WP_036731765.1				(PF01496)
WP_019124194.1				(PF12646)
WP_019124868.1				(PF01990)
WP_019124866.1				(PF16886)
WP_019124855.1				PF00191
WP_019124185.1				(PF01991)
WP_019107528.1				(PF01990)
WP_019124326.1				(PF16199)
WP_019124187.1				(PF16886)
WP_019124594.1				(PF06100)
WP_019124189.1				(PF01813)
WP_019124871.1				(PF01992)
WP_019124283.1				PF07847
WP_019124769.1				(PF16199)
WP_019124824.1				(PF02361)
WP_036731393.1				(PF16199)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================