Effective results for Nevskia soli DSM 19509 (refseq)

Summary

Number of putative secreted proteins: 209
- Predicted by T4SEpre: 86
- Predicted by EffectiveELD: 31 eukaryotic-like domains, contained in 139 proteins (15 high, 124 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
WP_029923126.1+(PF02544)ER
WP_029919006.1(PF03176)ER
WP_029922109.1(PF06966)ER
WP_051749062.1+ER
WP_051748462.1(PF10503)mitochondrial
WP_029918813.1(PF01425)ER
WP_029923241.1(PF11196)ER
WP_051749517.1(PF01425)ER; (mitochondrial)
WP_036516390.1(PF01425)ER
WP_051748493.1+ER
WP_029918570.1(PF03176)(mitochondrial)
WP_051749232.1+ER
WP_051749271.1+(ER)
WP_036515744.1(PF01425)ER
WP_036516783.1(PF03176)(mitochondrial)
WP_051748835.1(PF01564)ER
WP_029918553.1+ER
WP_029920233.1(PF01425)mitochondrial
WP_051748201.1(PF11196)ER
WP_029919235.1(PF03176)ER; (ER)
WP_029922492.1+mitochondrial
WP_029923210.1+ER
WP_051748396.1(PF14870)mitochondrial
WP_029919384.1PF01607(mitochondrial)
WP_029921334.1+ER
WP_029922642.1(PF01425)ER
WP_051749491.1+ER
WP_029923003.1+ER
WP_051749188.1(PF10503)ER
WP_029919869.1PF07343ER
WP_036517224.1(PF04185)ER
WP_036516733.1(PF03176)mitochondrial
WP_029920879.1+ER
WP_051748739.1(PF01425)mitochondrial; (mitochondrial)
WP_051748689.1+ER
WP_029920889.1(PF06966)ER
WP_051748920.1(PF03176)mitochondrial
WP_029921901.1+ER
WP_051749108.1(PF10503)ER
WP_029920227.1(PF01425)(ER)
WP_029922686.1(PF03176)ER
WP_029920366.1+ER
WP_051749233.1+ER
WP_029920229.1(PF01425)(mitochondrial)
WP_036516288.1+ER; (ER)
WP_051749568.1(PF10503)ER
WP_051749278.1PF09286ER
WP_029922990.1(PF04185)mitochondrial
WP_051748921.1+(mitochondrial); (plastid)
WP_029920855.1(PF04185)(mitochondrial)
WP_051748189.1(PF05118)(mitochondrial)
WP_029921004.1+ER
WP_036516114.1+ER
WP_051748648.1(PF03176)ER
WP_029921695.1+(ER)
WP_029922446.1(PF00150)ER
WP_029923097.1PF09286ER
WP_029921857.1PF09286(mitochondrial)
WP_029922430.1+mitochondrial
WP_029920832.1(PF03176)mitochondrial
WP_051749384.1(PF10503)ER
WP_029919529.1(PF01425)ER
WP_051748241.1+ER; (ER)
WP_029922354.1(PF04185)(mitochondrial)
WP_029923113.1(PF11196)ER
WP_029923287.1(PF04185)ER
WP_029919571.1(PF03176)ER
WP_029920218.1(PF01425)ER
WP_029920464.1+ER
WP_029923289.1(PF04185)ER
WP_051749199.1(PF00150)ER
WP_029919381.1+ER
WP_051748703.1(PF01425)(mitochondrial)
WP_029921405.1(PF00150)(ER)
WP_029921439.1(PF14870)(mitochondrial)
WP_051749494.1+(ER)
WP_051748298.1+ER
WP_051748135.1(PF14870)ER; (ER)
WP_036517550.1PF02460 (PF03176)(ER)
WP_029922742.1+(ER)
WP_029922072.1+plastid
WP_029921828.1(PF01968) (PF05378)
WP_029920289.1(PF04734) (PF17048)
WP_051749351.1PF09286(mitochondrial)
WP_051748466.1(PF02424)(mitochondrial)
WP_051748860.1+(mitochondrial)
WP_029920825.1(PF01968) (PF05378)
WP_051748719.1PF09286(ER)
WP_051748701.1(PF01425)(ER)
WP_051749120.1(PF01968) (PF05378)
WP_029922007.1(PF04185)(mitochondrial)
WP_029920540.1(PF00150)plastid
WP_051748706.1+(ER)
WP_029919594.1(PF03176)(ER)
WP_029919421.1+plastid
WP_051748869.1(PF10503)(plastid)
WP_051748741.1(PF01425)(plastid)
WP_029921398.1(PF01968) (PF05378)
WP_029919104.1(PF04185)(plastid)
WP_029922651.1(PF01425)(ER)
WP_051748141.1PF09286plastid
WP_029918699.1+(mitochondrial)
WP_051748893.1(PF01968) (PF05378)
WP_029923092.1(PF10503)(plastid)
WP_029921905.1(PF01968) (PF05378)
WP_029921400.1(PF01968) (PF05378)
WP_051749451.1PF02460 (PF03176)
WP_036517454.1PF09286plastid
WP_029920216.1(PF01425)(mitochondrial)
WP_029920232.1(PF01425)(mitochondrial)
WP_029920290.1(PF02424)(mitochondrial)
WP_051749287.1(PF12483)(ER)
WP_051747953.1+
WP_051749035.1+
WP_029922981.1(PF02424)
WP_029919940.1+
WP_029921085.1(PF00150)
WP_029922070.1(PF09537)
WP_029921083.1(PF00150)
WP_029921448.1+
WP_029922053.1+
WP_029922644.1+
WP_051748933.1+
WP_029922672.1+
WP_051748410.1(PF10503)
WP_051748412.1(PF05118)
WP_029920053.1PF09286
WP_029919067.1(PF05118)
WP_029920230.1(PF01425)
WP_029921998.1+
WP_051748476.1+
WP_051749112.1(PF01564)
WP_029920689.1+
WP_029921417.1(PF01425)
WP_029921280.1(PF00887)
WP_051749454.1(PF14870)
WP_029921202.1+
WP_051748063.1+
WP_029920215.1(PF01425)
WP_036516879.1+
WP_029919650.1+
WP_029918541.1+
WP_029923294.1+
WP_051748190.1(PF05118)
WP_036516173.1(PF10503)
WP_051748672.1(PF04185)
WP_029919826.1(PF11815)
WP_051748203.1(PF02685)
WP_051747986.1(PF04185)
WP_029923457.1(PF04185)
WP_029920999.1+
WP_029922332.1(PF01192)
WP_029918719.1(PF11539)
WP_029919697.1+
WP_051747926.1(PF00887)
WP_029923206.1+
WP_051749074.1(PF00150)
WP_051749054.1(PF01564)
WP_051749052.1(PF01564)
WP_029922261.1PF00961
WP_036517969.1+
WP_029919451.1+
WP_029920448.1+
WP_029921337.1(PF03176)
WP_029923400.1(PF02685)
WP_051749419.1(PF06966)
WP_051749468.1(PF04185)
WP_036515730.1(PF14870)
WP_029921587.1(PF02424)
WP_051748861.1(PF09537)
WP_029919468.1PF09286
WP_051748590.1+
WP_029919440.1(PF09537)
WP_029921174.1+
WP_029920882.1(PF01425)
WP_029918962.1(PF03176)
WP_029918654.1PF02041
WP_036517142.1(PF02424)
WP_029921902.1(PF01564)
WP_051749250.1(PF04185)
WP_051749179.1+
WP_029921459.1(PF14832)
WP_029918784.1+
WP_029921687.1(PF02685)
WP_029918734.1(PF00368)
WP_051749149.1(PF02424)
WP_029919078.1+
WP_051749053.1(PF01564)
WP_036517512.1+
WP_051749421.1(PF02685)
WP_051749427.1+
WP_029922383.1+
WP_029919074.1(PF05118)
WP_029922157.1(PF01192)
WP_029922186.1+
WP_029922767.1+
WP_029922769.1+
WP_029922184.1(PF04185)
WP_029922915.1+
WP_029922281.1(PF00368)
WP_036517971.1(PF03176)
WP_036517452.1(PF00150)
WP_036516537.1+
WP_051749169.1(PF04185)
WP_029923201.1+
WP_029919391.1(PF04734)
WP_029918595.1+
WP_036515785.1(PF11815)
WP_029920742.1(PF01425)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.8 (8/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.0 (8/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================