Metamenu

Effective results for Caldalkalibacillus thermarum TA2.A1 (refseq)

Summary

Number of putative secreted proteins: 18
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 18 proteins (1 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
WP_042685010.1(PF01931)(mitochondrial); (plastid)
WP_007502137.1(PF13386)ER
WP_050009220.1(PF13386)ER
WP_050009168.1(PF13386)ER
WP_007506667.1PF10176ER
WP_042685117.1(PF06695)ER
WP_007502280.1(PF07653)(mitochondrial)
WP_007505203.1(PF01946)
WP_007505508.1(PF09419)
WP_007506362.1(PF06695)
WP_007506405.1(PF01946)
WP_007502191.1(PF14330)
WP_007505817.1(PF08761)
WP_007505479.1(PF02679)
WP_007502917.1(PF05495)
WP_007503547.1(PF01931)
WP_007502535.1(PF02679)
WP_007504110.1(PF08761)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================