Effective results for Prochlorococcus marinus str. AS9601 (eggnog40)

Summary

Number of putative secreted proteins: 104
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 88 eukaryotic-like domains, contained in 104 proteins (8 high, 96 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
146891.A9601_07091				(PF16166)	ER
146891.A9601_05571				(PF11016)	ER
146891.A9601_05641				(PF13326)	mitochondrial
146891.A9601_12551				(PF00283)	ER
146891.A9601_05171				(PF16639) (PF01333)	(mitochondrial)
146891.A9601_18531				(PF01737)	ER
146891.A9601_05241				(PF02507)	ER
146891.A9601_08591				(PF12452)	ER
146891.A9601_03391				(PF00421)	(mitochondrial)
146891.A9601_15581				(PF02544)	(ER)
146891.A9601_06261				(PF10716)	ER
146891.A9601_02491				(PF01716)	(mitochondrial); (plastid)
146891.A9601_12041				(PF01789)	ER
146891.A9601_01291				(PF05421)	(ER); (plastid)
146891.A9601_09971				(PF11152)	ER
146891.A9601_07501				(PF00504)	ER
146891.A9601_17901				(PF12046)	ER
146891.A9601_06271				(PF11460)	ER
146891.A9601_12431				PF02468	ER
146891.A9601_10481				(PF06799)	(ER)
146891.A9601_03411				(PF05151)	ER; not used
146891.A9601_03201				(PF00284) (PF00283)
146891.A9601_03211				(PF00283)	(ER); not used
146891.A9601_02741				PF02468	ER; not used
146891.A9601_02751				(PF02532)	ER; not used
146891.A9601_02731				(PF00737)	(mitochondrial)
146891.A9601_14861				(PF13355)
146891.A9601_08021				(PF11264)
146891.A9601_13061				(PF00504)	not used
146891.A9601_03221				PF02419	not used
146891.A9601_06761				(PF07082)
146891.A9601_06781				(PF01744)
146891.A9601_11191				(PF04755)
146891.A9601_01251				(PF12095)
146891.A9601_02531				(PF04483)
146891.A9601_17281				(PF00223)
146891.A9601_03231				(PF01788)
146891.A9601_12231				(PF06298)	not used
146891.A9601_16881				(PF04983)
146891.A9601_09661				(PF11360)
146891.A9601_07221				(PF12049)
146891.A9601_00791				(PF11969)
146891.A9601_08051				(PF11347)
146891.A9601_18011				(PF05996)
146891.A9601_03111				PF00493
146891.A9601_17701				PF10999
146891.A9601_15251				(PF11317)
146891.A9601_05191				(PF11267)
146891.A9601_17241				(PF00796)	not used
146891.A9601_18141				(PF11623)
146891.A9601_18851				(PF01947)
146891.A9601_13571				(PF08854)
146891.A9601_16871				(PF04983)
146891.A9601_17271				(PF00223)
146891.A9601_09751				(PF09353)
146891.A9601_11101				(PF04755)
146891.A9601_08011				PF03742	not used
146891.A9601_13631				(PF00421)
146891.A9601_17671				(PF12617)
146891.A9601_06871				(PF13455)
146891.A9601_18021				(PF05996)
146891.A9601_10241				(PF11210)
146891.A9601_17851				(PF02531)
146891.A9601_02761				(PF12600)
146891.A9601_17661				(PF11909)
146891.A9601_03381				(PF01405)	not used
146891.A9601_12121				(PF10674)
146891.A9601_04411				(PF08853)
146891.A9601_01391				(PF11910)
146891.A9601_03551				(PF02427)
146891.A9601_13351				(PF00421)
146891.A9601_17231				(PF02605)
146891.A9601_16491				(PF11805)
146891.A9601_12791				PF10999
146891.A9601_06811				(PF09493)
146891.A9601_15161				(PF00504)
146891.A9601_02941				(PF02533)	not used
146891.A9601_15301				(PF08855)
146891.A9601_09571				(PF10693)
146891.A9601_07531				(PF09493)
146891.A9601_08081				(PF05996)
146891.A9601_09561				(PF12159)
146891.A9601_13331				(PF02392)
146891.A9601_01621				(PF10664)
146891.A9601_12861				PF10999
146891.A9601_02821				(PF11378)
146891.A9601_00761				(PF00504)
146891.A9601_06831				(PF00421)
146891.A9601_13651				(PF13911)
146891.A9601_01631				(PF11371)
146891.A9601_07191				(PF11833)
146891.A9601_16421				(PF04839)
146891.A9601_09161				(PF11947)
146891.A9601_09291				(PF11282)
146891.A9601_16991				(PF11998)
146891.A9601_03511				(PF12899)
146891.A9601_00741				(PF06596)
146891.A9601_10171				(PF04483)
146891.A9601_13291				(PF08041)	not used
146891.A9601_08541				(PF12527)
146891.A9601_03651				(PF01786)
146891.A9601_16751				(PF11341)
146891.A9601_11631				(PF02529)	not used
146891.A9601_18591				(PF04481)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================