Effective results for Flavobacteria bacterium BBFL7 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 29 proteins (6 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
156586.BBFL7_01171				(PF04784)	ER
156586.BBFL7_00988				(PF15902)	ER
156586.BBFL7_01161				(PF04784)	ER
156586.BBFL7_01614				(PF15902)	mitochondrial
156586.BBFL7_02050				(PF16313)	mitochondrial
156586.BBFL7_00190				(PF14240)	ER
156586.BBFL7_01110				(PF16561)	ER
156586.BBFL7_02134				(PF15902)	ER
156586.BBFL7_01879				(PF16561)	ER
156586.BBFL7_02094				(PF16313)	ER
156586.BBFL7_00641				PF00629	ER
156586.BBFL7_00640				PF00629	ER
156586.BBFL7_01502				PF00629	ER
156586.BBFL7_01089				(PF16313)	ER
156586.BBFL7_00639				PF00629	ER
156586.BBFL7_00706				(PF04784)	ER
156586.BBFL7_02364				(PF14240)	ER
156586.BBFL7_00151				PF02014	ER
156586.BBFL7_01570				(PF03321)	(mitochondrial)
156586.BBFL7_00818				(PF09112) (PF09113)
156586.BBFL7_01370				(PF03321)	(ER)
156586.BBFL7_01865				(PF09537)
156586.BBFL7_01275				(PF12899)
156586.BBFL7_02468				(PF03321)
156586.BBFL7_01070				(PF09537)
156586.BBFL7_00862				(PF09537)
156586.BBFL7_00462				(PF10504)
156586.BBFL7_00141				PF13691
156586.BBFL7_02378				(PF03016)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================